Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2402 ATGCATTCACATCACAGAGAGAAATCCAAAATAATGGAAACTTGCGGTGAAAAAAAAAGGGCTTGGTCTTCGGAAGAAGACGACATCCTCATGAAATACGTTGAAGTCCATGGAGAAGGAAATTGGAGTGACCTTCCCAGAAGAGCTGGCTTGAACCGATGTGGTAAATGTTGCAAAGTGCGATGGCTGAACTATCTGAAGCCAGCAATCGATAGAAGAAACATTTCTTCTGATGAAGAAGAGCTCATAATTAAACTGCATAAGCTCCTGGGGAATAGATGGTCTATCATTGCAGGACGATTACCAGGACGCACCGAAACTGAGATCGAAAACTTTTGGAATATTTATTTGAGCAAGAAAGTAGAAGAGATGCAGGAAAACAACAAATTCCCAAGCACAACTACAACCACAAATTCTAGTGTTCAATCTCCCAATTGCACCAAAAGCTCCTTGGATTTTTATCCTTCAGAATTTTCCCACCCGGTGATTAAACCAAAAGCCGTGAGGTTAACCAAGCCTATCATGCCAACACAAATTGGCTGGGATAACCAGAACCTTTATAACTAA 567 0.4109 MHSHHREKSKIMETCGEKKRAWSSEEDDILMKYVEVHGEGNWSDLPRRAGLNRCGKCCKVRWLNYLKPAIDRRNISSDEEELIIKLHKLLGNRWSIIAGRLPGRTETEIENFWNIYLSKKVEEMQENNKFPSTTTTTNSSVQSPNCTKSSLDFYPSEFSHPVIKPKAVRLTKPIMPTQIGWDNQNLYN* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2402 188 ProSiteProfiles Myb-like domain profile. 18 66 IPR001005 -
Apr1g2402 188 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Apr1g2402 188 SMART sant 18 68 IPR001005 -
Apr1g2402 188 SMART sant 71 119 IPR001005 -
Apr1g2402 188 CDD SANT 76 117 IPR001005 -
Apr1g2402 188 Gene3D - 18 72 - -
Apr1g2402 188 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 15 173 - -
Apr1g2402 188 Pfam Myb-like DNA-binding domain 76 117 IPR001005 -
Apr1g2402 188 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Apr1g2402 188 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Apr1g2402 188 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 15 173 - -
Apr1g2402 188 Gene3D - 75 146 - -
Apr1g2402 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 121 IPR017930 -
Apr1g2402 188 CDD SANT 21 66 IPR001005 -
Apr1g2402 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2402 Apr-Chr1 33636999 33638795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2402 16 121 MYB Transcription Factor Family AT3G13540 58.491 9.78e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g2402 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2402 K09422 - gmx:778159 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2402 1 33636999 33638795 Apr9g2473 9 32070151 32071644 PCT