Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2398 ATGTCGGTGAATCTGACGGCAAACGCGATTCCTGCTATCGTTGGCGGCGACGTGAACGCGAAACCGCTGGTTCAGGTTATGGAGATTACGTTAGTCTCCAACCGCAATAACTCCCAGCAACAGCGATACCGTCTTCTGCTTTCCGACGCCGTTTCGTGTCACCACGCGATGATCGCCATTCAGCTTAACGACCGAGTCCGAACCAACCGAGTGAAGAAGGGTTCCGTTGTTCAGCTTCTCGACTATATATGCTCTCATCTCAAGAACCGCAAGATTATTATGGTTCTCAACATGGAAACTATAATACTCGATTGTGAGATCATTGGGAATCCTAAGCCATTTATGGATTCTGATTTACCAACTCCGAGAGCCTTGGCTGATAACAGTAACACTGTGGAGAATTTGCCCAGGGTTAATAATAATAATAATAATTCTGCTGCTCAAAATGCAAGTCATAATAATGGGCAGGATTTCAGGCCAACGGTTCAACCTCCATATCAGCCGCGTCCAGTTTACAAAGGCCGCGGTGCAATTGTGAAAAATGAGGCACCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTAACTGCTAAAGGGGATCTGCGCCGCTATAATAACGCCCGTGGTGATGGGAAAGTCTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATTCGAGTAACCTGCTTTAATGCTGTTGTGGATCGCTTCTATGATACAATTGAGGTTGGTAAAGTTTACTTGATATCCAAAGGTAGCTTGAAACCTGCACAGAAGAATTTCAACCATTTGAAAAATGAATGGGAGATTATTTTGGATTCAACTTCAACGGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTACACAGCAGTTCTCCTTCAGGCCTATAAGTGACATTGAAAATGTTGACAATAATGCCATCCTTGATGTTATTGGGGTAGTGACTTCTGTGAATCCTTCAGTTCCCATCTTGAGGAAAAATGGAATGGAAACCCAGAGAAGAATTTTGAGTCTAAAAGACAGTTCTGGCAGGAGTGTTGAACTTACACTGTGGGGTGAATTCTGCAACAGGGAAGGACAAAAACTGCTAGAGATGGTGGATAGTGGGCTTTTCCCAATTTTGGCAGTCAAAGCTGGGAAGGTTAATGAGTTTAGTGGAAAGTCTATAGGCTCGATATCTACCACACAGCTTTTCATAAATCCTGATTTCCCTGAGGCTCATCACTTAAGAGACTGGTTCAATCATGTGGGTAAAGATTCTGCATCCGTATCAATTTCTAAGGATATTATTCCTGGAGGGCCAAAGAATGAGATACGCAAAACTGTGTATCAAATCAAGGATGAAGGTCTGGGGCGGTCAGACAAGCCAGACTGGATAACAGTGAGGGCAACCATATCATTTATCAAGACCGATTCATTTTGCTACACAGCTTGCCCTCTGATGATTGGGGATCGACAATGCAATCAAGAGTTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATTTTGGATTGCACGGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGGGAAGAGATTATGGGGTACTCAGCGAAGGACCTGTACTTGTTGAAGTATGAACAGGATGATGATGAGAGGTTTGGAGAAATTTTCAAGAGTAGACTTTTCAACCAGTTTGTATTTAAGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAAAAGGTGAAGATTACTGTAGTCAAGGCAGATAAGGTGAATTATTCTTCAGAGAGTAGATACATGATTGATTTGATTTCCAAATTTTGTAGGCAGTAA 1851 0.43 MSVNLTANAIPAIVGGDVNAKPLVQVMEITLVSNRNNSQQQRYRLLLSDAVSCHHAMIAIQLNDRVRTNRVKKGSVVQLLDYICSHLKNRKIIMVLNMETIILDCEIIGNPKPFMDSDLPTPRALADNSNTVENLPRVNNNNNNSAAQNASHNNGQDFRPTVQPPYQPRPVYKGRGAIVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDTIEVGKVYLISKGSLKPAQKNFNHLKNEWEIILDSTSTVELCPDEDGSIPTQQFSFRPISDIENVDNNAILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGRSVELTLWGEFCNREGQKLLEMVDSGLFPILAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAHHLRDWFNHVGKDSASVSISKDIIPGGPKNEIRKTVYQIKDEGLGRSDKPDWITVRATISFIKTDSFCYTACPLMIGDRQCNQEFEECDYRYLLQAQILDCTGLTWVTAFQEAGEEIMGYSAKDLYLLKYEQDDDERFGEIFKSRLFNQFVFKLKIKEELYGDEQKVKITVVKADKVNYSSESRYMIDLISKFCRQ* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2398 616 SUPERFAMILY Nucleic acid-binding proteins 453 613 IPR012340 -
Apr1g2398 616 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Apr1g2398 616 MobiDBLite consensus disorder prediction 135 165 - -
Apr1g2398 616 Pfam OB-fold nucleic acid binding domain 201 284 IPR004365 GO:0003676
Apr1g2398 616 Gene3D - 3 115 IPR012340 -
Apr1g2398 616 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Apr1g2398 616 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Apr1g2398 616 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 609 - -
Apr1g2398 616 CDD RPA1_DBD_C 456 612 IPR013955 -
Apr1g2398 616 Gene3D - 299 438 IPR012340 -
Apr1g2398 616 MobiDBLite consensus disorder prediction 135 161 - -
Apr1g2398 616 CDD RPA1_DBD_A 189 292 - -
Apr1g2398 616 Gene3D - 186 296 IPR012340 -
Apr1g2398 616 PANTHER REPLICATION FACTOR A 1, RFA1 2 609 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Apr1g2398 616 SUPERFAMILY Nucleic acid-binding proteins 186 299 IPR012340 -
Apr1g2398 616 CDD RPA1_DBD_B 321 428 - -
Apr1g2398 616 Pfam Replication protein A OB domain 310 414 IPR031657 -
Apr1g2398 616 SUPERFAMILY Nucleic acid-binding proteins 304 431 IPR012340 -
Apr1g2398 616 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 612 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Apr1g2398 616 Pfam Replication factor-A C terminal domain 472 605 IPR013955 -
Apr1g2398 616 Gene3D - 444 614 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2398 Apr-Chr1 33605705 33608872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2398 26 612 Core DNA Replication Machinery Family AT2G06510 68.130 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2398 K07466 - gmx:100792409 1051.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2398 1 33605705 33608872 Apr1g2398 1 33605705 33608872 ECH