Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2396 ATGTTTACATCTGGGTACTTTAGTTACGGAAATGTTCATGCTGAGGAAAGGGATCTTTTCCTTATTCGTGGGAGAAGAAGCTACGTTGTAGCTGAAATCGATGCTTCACTGTTTGAAACCCAACAATTGCTTTTGGAGAAGCTAGAAAGTTCTCACCTTGACATGGAAGAAGAAAAAACACTCGTGGCAGACAAGAAAGTGACAAAGAACGAGGTTGTTCTAAGAATTTCAGACACAGAAGAGGCTTTGTACATAACGAAGGATAGCACATATTGTAGAAGTTCCCCAGTAGCTGAAAACACTTCCCATTCTCCTCAGCACAATACCCAGATGGGTAAAGGGTTCAGAGATTCACATGGTGAAGTCACTGAACTTGAGAGTCTCAGAAACAAGGGTGAAGCTTCCACGGAGTTGGTGACAACAACACGTGGGTTGTTGGGTCGGTCGGAATTTTCGAAGCCAAAGTCCAGAATGGTGGAACATCCATGTCCAAAAGGTGCAAAAGTTGTTGAAGGAAAAGCTCAAATGACAAGTTCCAATTCATCTTCAAGGAATTCTCCTAACAAGAATGTTACAGTTAATGCTCCAAGGGATGCTATTGATGCAACCCTTGTTACCCCACGAACCCCTTTGATTGGAACACAAGGGGAAGAGGAAGATGATGTAGAAGAAGAAGTGTACAAGACTGCAAATATTGAAGTGAGCAAGAGGTTTGGTAAGAAGTGGAGAGTGATGGGTTTGTTTGAGTGGTTTTCTTTTGTTTGTATTGTGGGGATTTTGATTGCAAGCTTGAGTGTGTATAAGTTGCAACATGTGGAAATATGGGGCTTGGAAGTGTGGAAGTGGTGTGTATTGGCATTGGTTATTCTATGTGGTAGATTGGTCACTGAGTGGTTTATCAATGTTCTGGTTTTCTTGATTGAAAGGAATTTCTTGTTTAAAAGGAAGGTTTTGTATTTTGTTTATGGTGTTAAGAAGAGTGTTCAGGCTTTCATATGGCTGAGTTTGGTACTTTTGGCATGGGGTTTGCTTTTCAACCATGGAGTTAAGAGAACAAGGAAAGTTACTAGGATTCTTAGTTATATTACTAGGGCTCTTGCGTCTTGTCTTATTGGAGCAGCTATATGGTTACTAAAGACACTGTTGATAAAGCTGTTAGCTTCATATTTCCAATCTACTAGATTTTTTGATAGGGTTCAAGAATCAATCTTTCATCAATACATTCTGAGGGCTCTTTCTGGCCCTCCCTTGATAGAGATGGCTGAAACAGTAGGCAAGACTTCAAATAGTGGCCGACTCAGTTTCAAGACCATGATTAGAGACAATAAGAATGAAGGGAAGAAAGAACAAGTCATTGATGTGGACAAGCTCAAGAAAATGAACCAAGAGAAAGTTTCTGCTTGGACCATGAAAGGATTGGTTAATGTGATAAGGAGTTCTGGGTTATCTACCATCTCCTATACTCCTGACGGTGTCGATGAAGACGAGAGTGACCAGAAGGATAATGAAATTACTAGTGAGTGGGAAGCAAAGGCAGCTGCTTATCGAATTTTTAGGAATGTAGCAAAGCCAGGAAGCAAGTACATTGAGAAGGAAGACCTCTTGCGATTCATGAAAAATGAAGAAGTGGAAAATGTGTTTCCACTATTTGAAGGTGCAGTTGAGACTGGAAAAATTAAGAGGAAGTCTCTGAAGAACTGGCTGGTCAAAGTCTACCTTGAACGCCGATCACTTGTGCATTCACTGAATGATACCAAAACAGCCGTTGATGAGTTGAATAAGCTTGCTTCTGTAATTGTCCTTCTGGTGATCGTCATTGTGTGGCTACTTATAATGGGTTTCTTAACCACTCAAGTTCTTGTCTTTATTTCATCTCAGCTTTTACTTGTGGTATTTATATTTGGAAACACAGCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCATACGACGTTGGTGATCGTTGTGTGATTGATGGTGTTCAGATGATTGTAGAAGAGATGAACATACTTTCTACAGTCTTTTTGAGATATGACAATGAAAAGATATTCTATCCAAATTCTGTTCTTGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTTGGTTGAATTTGCAGTTGATGTTTCTACTTCTATTGAGAGTATTGGAGCTTTAAAGGCGAGGTTAAAAACATACTTGGAGAGTAGGCCACAACACTGGCATCCCAGTCACAGTGTATTGGTGAAGGATATTGAGAATGTAAACAAGATGAAAATGGGTTTGTCTGTTACTCACACCATAAATTTTCAAAATTATGGGGACAGAAATAGCCGAAGATCTGAATTAGTCCTGGAGTTGAAGAAAATTCTTGAAGATCTTGATATTAAATATCATTTGCTGCCACAAGAAGTTCATCTTAGTTATGAAAGGTCAGAAGACTCAACGGCGCGAACATTTTGA 2469 0.3953 MFTSGYFSYGNVHAEERDLFLIRGRRSYVVAEIDASLFETQQLLLEKLESSHLDMEEEKTLVADKKVTKNEVVLRISDTEEALYITKDSTYCRSSPVAENTSHSPQHNTQMGKGFRDSHGEVTELESLRNKGEASTELVTTTRGLLGRSEFSKPKSRMVEHPCPKGAKVVEGKAQMTSSNSSSRNSPNKNVTVNAPRDAIDATLVTPRTPLIGTQGEEEDDVEEEVYKTANIEVSKRFGKKWRVMGLFEWFSFVCIVGILIASLSVYKLQHVEIWGLEVWKWCVLALVILCGRLVTEWFINVLVFLIERNFLFKRKVLYFVYGVKKSVQAFIWLSLVLLAWGLLFNHGVKRTRKVTRILSYITRALASCLIGAAIWLLKTLLIKLLASYFQSTRFFDRVQESIFHQYILRALSGPPLIEMAETVGKTSNSGRLSFKTMIRDNKNEGKKEQVIDVDKLKKMNQEKVSAWTMKGLVNVIRSSGLSTISYTPDGVDEDESDQKDNEITSEWEAKAAAYRIFRNVAKPGSKYIEKEDLLRFMKNEEVENVFPLFEGAVETGKIKRKSLKNWLVKVYLERRSLVHSLNDTKTAVDELNKLASVIVLLVIVIVWLLIMGFLTTQVLVFISSQLLLVVFIFGNTAKTVFEAIIFVFVMHPYDVGDRCVIDGVQMIVEEMNILSTVFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDLVEFAVDVSTSIESIGALKARLKTYLESRPQHWHPSHSVLVKDIENVNKMKMGLSVTHTINFQNYGDRNSRRSELVLELKKILEDLDIKYHLLPQEVHLSYERSEDSTARTF* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2396 822 MobiDBLite consensus disorder prediction 117 131 - -
Apr1g2396 822 MobiDBLite consensus disorder prediction 173 193 - -
Apr1g2396 822 MobiDBLite consensus disorder prediction 133 147 - -
Apr1g2396 822 Pfam Mechanosensitive ion channel 593 799 IPR006685 GO:0016020|GO:0055085
Apr1g2396 822 MobiDBLite consensus disorder prediction 96 113 - -
Apr1g2396 822 MobiDBLite consensus disorder prediction 96 193 - -
Apr1g2396 822 MobiDBLite consensus disorder prediction 153 167 - -
Apr1g2396 822 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 66 813 - -
Apr1g2396 822 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 66 813 IPR016688 -
Apr1g2396 822 PIRSF Memb_At2g17000 46 821 IPR016688 -
Apr1g2396 822 Gene3D - 653 702 IPR023408 -
Apr1g2396 822 SUPERFAMILY Sm-like ribonucleoproteins 643 702 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2396 Apr-Chr1 33596742 33603373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2396 141 810 Mechanosensitive Ion Channel Family AT5G12080 54.222 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2396 K22048 - gmx:100777332 1194.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2396 1 33596742 33603373 Apr1g2396 1 33596742 33603373 ECH