Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2395 ATGGGGGATGTTCTAAGCCCCTTCACAGTCTCAACCCCTCCTCCACCCTCTTCCTCGTCAAGCAAGAACAACATGCCCATGTTGTACTATGGTCTTGTTGTGGTGGGAACTGCAGCCATAGTGCTAGCCATATACAACCTCATCATCATAAAACGTTGCAACAGGCGCCACAATCAATCACAAGCATCAGGGCCAAATGGGTTGGTAATTGATCAAGGAGTGAGTGAAAACACAAGAAGCTTTGACACCCCACAAAGGAACTTGCTTTCAAGCTTCAAGTACAAAAAAGAAGTGGTAGCAAAAGAAGAAGGAGAAGAAGAAAATGATGATTACGAATGTTCAGTTTGTTTATCAGTTTATGAAGAAGGGGAAGAAGTGAGGAAGCTACCACGGTGCAACCACTGTTTCCATGTTGTGTGCATAGACATGTGGCTTTACTCTCACTTTGATTGCCCAATTTGTAGAACACCCGTTGGGCCTTTTTGCCACCCTTTTCCGGCAGAGAATTCTCGTGATGTGTTGATGGAATCCGGTGGCATCATCAACACTGTTAATTGA 558 0.4462 MGDVLSPFTVSTPPPPSSSSSKNNMPMLYYGLVVVGTAAIVLAIYNLIIIKRCNRRHNQSQASGPNGLVIDQGVSENTRSFDTPQRNLLSSFKYKKEVVAKEEGEEENDDYECSVCLSVYEEGEEVRKLPRCNHCFHVVCIDMWLYSHFDCPICRTPVGPFCHPFPAENSRDVLMESGGIINTVN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2395 185 Pfam Ring finger domain 112 155 IPR001841 -
Apr1g2395 185 SUPERFAMILY RING/U-box 90 164 - -
Apr1g2395 185 SMART ring_2 113 154 IPR001841 -
Apr1g2395 185 MobiDBLite consensus disorder prediction 1 22 - -
Apr1g2395 185 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 163 IPR044675 -
Apr1g2395 185 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 163 - -
Apr1g2395 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 159 IPR013083 -
Apr1g2395 185 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2395 Apr-Chr1 33590743 33591300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2395 16 158 C3H Transcription Factor Family AT1G04360 37.333 1.98e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2395 - - aprc:113852327 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2395 1 33590743 33591300 Apr1g2395 1 33590743 33591300 ECH
Apr9g2479 9 32103729 32104220 Apr1g2395 1 33590743 33591300 PCT