Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2390 ATGAAGCCATTTCTCCTTTTCAATCATCCTGATACCGAGTTCAATGTTCCACAAGCTAGCTATAATCACCCAATGGCTTATACTGCATATCCTTATGGCGATCCAAATTTTGCTTATGGACCACAGGCTTTTAATGAACCCCAAATGATGCCCCAAATGCTAGGATTAGCACCCGCCAGAGTGCCATTACCACTTGATCTTGCAGAAGATGGACCTATTTATGTTAATGCGAAACAATACCATGGTATACTCAGAAGGAGACAGTCACGAGCAAAGCTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCATTGAATAGGGTTAGGGGATCAGGGGGACGATTTCTGAGCACCAAAAAGCATTCACAGTCAAGTGCAGAATTTGTGACTGGTGCACATTCTACCTCTGACCCTGTCAACATGTATCAAAAGGAAGAAGATCCATCAGAGTTGGAAAGTCATTTGTTGATGACCGGAGATAATGCGTGTTTAACTGGTGACGGTGTCGATTTCGGGCAGGCGGAGCTCATGTTTATGGGAAACTCTTCGAACATGGCTGGAGCACCACAATGCAGCGGGGGGTCACTTGCCTTTGGTGGAAGAAAGCGACGTGCTTCGATTGTCCGGTGA 663 0.46 MKPFLLFNHPDTEFNVPQASYNHPMAYTAYPYGDPNFAYGPQAFNEPQMMPQMLGLAPARVPLPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKKHSQSSAEFVTGAHSTSDPVNMYQKEEDPSELESHLLMTGDNACLTGDGVDFGQAELMFMGNSSNMAGAPQCSGGSLAFGGRKRRASIVR* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2390 220 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 72 126 IPR001289 GO:0003700|GO:0006355
Apr1g2390 220 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 172 IPR001289 GO:0003700|GO:0006355
Apr1g2390 220 MobiDBLite consensus disorder prediction 127 150 - -
Apr1g2390 220 PRINTS CCAAT-binding transcription factor subunit B signature 72 94 IPR001289 GO:0003700|GO:0006355
Apr1g2390 220 PRINTS CCAAT-binding transcription factor subunit B signature 103 126 IPR001289 GO:0003700|GO:0006355
Apr1g2390 220 Gene3D - 69 131 - -
Apr1g2390 220 MobiDBLite consensus disorder prediction 123 150 - -
Apr1g2390 220 SMART cbf3 68 129 IPR001289 GO:0003700|GO:0006355
Apr1g2390 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 172 - -
Apr1g2390 220 ProSiteProfiles NF-YA/HAP2 family profile. 69 129 IPR001289 GO:0003700|GO:0006355
Apr1g2390 220 ProSitePatterns NF-YA/HAP2 subunit signature. 74 94 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2390 Apr-Chr1 33551230 33552908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2390 37 139 CCAAT-HAP2 Transcription Factor Family AT3G14020 64.078 1.76e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Apr1g2390 CBFB_NFYA 2.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2390 K08064 - gmx:100793856 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2390 1 33551230 33552908 Apr1g2390 1 33551230 33552908 ECH