Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2389 ATGGACGGTGGAGCACACTACAACCCTCGCACCGTCGAAGAGGTTTTCCGAGACTTCAAGGGTCGCAGAACCGCCATGATTAAAGCCCTCACCACTGAAAAGGAGAATCTTTGTCTTTATGGATTTCCCACCGAGCAATGGGAAGTTAATTTGCCTGCTGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCATTGGGCATAAATTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGTTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACTATCAGTGGCTTTCTACTTTGGGGCAAGATTTGGTTTTGATAAAGCTGACAGGAAGCGCCTGTTCACTATGATTAATGATCTGCCAACAATATTTGAGGTTGTGACTGGATCTGCAAAGAAACAGGTAAAGGAGAAATCACCAGTTTCAAACCACAACGACAACAAATCGAAGTCCAGTTCAAAAGGGCGAGCATCTGAATCTGGGAAGTTCTCAAAGCAAGCAAAGGATGAGGATGAGGGATTGGACGAAGAAGATGAGGAGGAGCATGGAGATACCTTGTGCGGCGCATGTGGGGAGAACTATGCATCTGATGAGTTTTGGATTTGTTGTGACATATGTGAGAAATGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCCCGAGCCGAGCACATCAAACAGTATAAGTGCCCCTCTTGCAGCAATAAGAGAGCACGGCCTTGA 720 0.4639 MDGGAHYNPRTVEEVFRDFKGRRTAMIKALTTEKENLCLYGFPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAKKQVKEKSPVSNHNDNKSKSSSKGRASESGKFSKQAKDEDEGLDEEDEEEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2389 239 MobiDBLite consensus disorder prediction 136 169 - -
Apr1g2389 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Apr1g2389 239 Pfam PHD-finger 186 235 IPR019787 -
Apr1g2389 239 SMART PHD_3 185 233 IPR001965 -
Apr1g2389 239 Pfam Alfin 11 128 IPR021998 GO:0006355|GO:0042393
Apr1g2389 239 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 239 - -
Apr1g2389 239 PANTHER CPG BINDING PROTEIN 3 239 IPR045104 GO:0006355|GO:0042393
Apr1g2389 239 CDD PHD_AL_plant 185 235 IPR044104 -
Apr1g2389 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 234 IPR013083 -
Apr1g2389 239 SUPERFAMILY FYVE/PHD zinc finger 175 236 IPR011011 -
Apr1g2389 239 MobiDBLite consensus disorder prediction 134 179 - -
Apr1g2389 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2389 Apr-Chr1 33539810 33546227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2389 1 238 Alfin-like Transcription Factor Family AT3G42790 75.000 6.58e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Apr1g2389 Alfin 9.7e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2389 - - rcu:8272513 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2389 1 33539810 33546227 Apr1g2389 1 33539810 33546227 ECH