Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2381 ATGGAGGAAATAACTTCAACGGTTGCAGTGCCATTCACCCTAGGGAATTTGATCCAGAATGAATCAGCAGTGAAGACCCACATGGAGATTACTGGTTTAAAGCTTATGGCAAATACAGCATCAGCTTTAATATTAAATCCTGCAACTGAGGGTTGCCAATCTTTTTCTGTTGAAAGTGAAAATCACACAGATATTAGTCCACAACCCCAAATTACAGTGTCTACAGAGGGAAAGGTGAATCAGGTTGGTGTTGACCTTGTCTCAGAAATGGTTAGTCAGGGAGACAATAACTGTTTCGTGACTCAAAGTCAAAAGAAGGCAAAAAAAGAAGATGAGCCCATGATTGCTAAGGATTTTCAGTGTATGCATCTCTCTCAATCTGCTACAAGTGACAAAAGTAGTCCTTGTAAGGAGGAATCTTCAATTTTGAGGACTAATTGTTATGAAGTAAAGCCACCAAACATGAACATCATCCATGATACGTCCACTTTGAAGCTAGAGCCAAGGCAGAACATGGCTTCTGTTGCTATGGAACTTGAGAGTGAAGATGGAAGTGGATCAGATGGCTGTGATCCAAAACCATTTGCTGCCTTTCATGAGAAGCCAGGGAAACAAACATGCTTGGAATTGAGTGGTACTCCTCCTCCTCCTACTACTCCTACTACCCCATTTTGGGGTTTCTCATCAGTTTGTGGAAGGAGAGAGGAGATGGAAGATGCTATTGCTATTAAGCCACACTTTTTTCAAGTTCCTTCATGGTTGGTAATGGATTACCATGTGAGTGAAAACACAAAATACTCACCAGCCCACTTTTTTGGTGTCTATGATGGACATGGGGGCTGTCAGGTTGCCAATTACTGCCGGGAACATCTTCATTCAGTGTTGGTTGATGAGATAGAAGCTGCACAACCAAGTTTGGATGAAAAGAATGGGAGGGACAACTGGGAGGATCAATGGAAGAAAGCATTCTCCAATTGCTTTCATAAAGTAGATGATGAGGTTGGAGGAGTTGGTGCAGATAACGGCGCAAGTGTTGAATCTCTTGCTCCTGAGACTGCTGGCTCCACTGCTGTGGTTGCCATTTTGAGTCAAACACACATAACTGTAGCAAATTGTGGAGATTCAAGAGCAGTCTTGTGTCGTGGAAAAGAAGCACTACCATTGTCTAATGACCACAAACCAAATAGAGAGGATGAGTTGGAAAGGATAGAAGCTGCAGGAGGAAGGGTCATACAATGGAATGGTTACAGAGTTCTAGGTGTTTTGGCAGTGTCAAGGTCCATAGGAGATAGGTACTTGAAGCCATGGATAATTGCAGAACCAGAAGTGAAGTGTGTTCATCGAGACAAAAACGATGAGTGCCTTATTCTAGCCAGTGATGGTTTATGGGATGTCATGACAAATGAAGAAGCCTGTGACATTGCTCGAAAGCGAATCCTTCTTTGGCATAAGAAAAATGCCAACAATGTTTCCACAGAACAATACCATGATGGAGTTGATCCTGCAGCTCACTATGCTGCAGAGTCTCTATCTAGACTTGCCCTCCAAAGGGGAAGCAGAGATAACATCTCTGTCATTGTTATAGACTTGAAGAAGGCCCAAAGAAAATTTAAGAGAAAAGAGTAA 1626 0.425 MEEITSTVAVPFTLGNLIQNESAVKTHMEITGLKLMANTASALILNPATEGCQSFSVESENHTDISPQPQITVSTEGKVNQVGVDLVSEMVSQGDNNCFVTQSQKKAKKEDEPMIAKDFQCMHLSQSATSDKSSPCKEESSILRTNCYEVKPPNMNIIHDTSTLKLEPRQNMASVAMELESEDGSGSDGCDPKPFAAFHEKPGKQTCLELSGTPPPPTTPTTPFWGFSSVCGRREEMEDAIAIKPHFFQVPSWLVMDYHVSENTKYSPAHFFGVYDGHGGCQVANYCREHLHSVLVDEIEAAQPSLDEKNGRDNWEDQWKKAFSNCFHKVDDEVGGVGADNGASVESLAPETAGSTAVVAILSQTHITVANCGDSRAVLCRGKEALPLSNDHKPNREDELERIEAAGGRVIQWNGYRVLGVLAVSRSIGDRYLKPWIIAEPEVKCVHRDKNDECLILASDGLWDVMTNEEACDIARKRILLWHKKNANNVSTEQYHDGVDPAAHYAAESLSRLALQRGSRDNISVIVIDLKKAQRKFKRKE* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2381 541 PANTHER ALPHABET, ISOFORM E-RELATED 119 541 - -
Apr1g2381 541 Pfam Protein phosphatase 2C 226 523 IPR001932 -
Apr1g2381 541 ProSiteProfiles PPM-type phosphatase domain profile. 224 530 IPR001932 -
Apr1g2381 541 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 119 541 - -
Apr1g2381 541 SMART PP2C_SIG_2 250 530 IPR001932 -
Apr1g2381 541 ProSitePatterns PPM-type phosphatase domain signature. 271 279 IPR000222 GO:0043169
Apr1g2381 541 SUPERFAMILY PP2C-like 221 531 IPR036457 -
Apr1g2381 541 SMART PP2C_4 214 528 IPR001932 -
Apr1g2381 541 CDD PP2Cc 226 530 IPR001932 -
Apr1g2381 541 Gene3D - 218 540 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2381 Apr-Chr1 33470905 33475910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2381 221 540 PP2C-type Phosphatase Gene Family AT4G26080 60.615 4.55e-133 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2381 K14497 - gmx:100812974 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2381 1 33470905 33475910 Apr1g2381 1 33470905 33475910 ECH
Apr9g2494 9 32206360 32209923 Apr1g2381 1 33470905 33475910 PCT