Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2378 ATGGATGATCATGAGAAGGAGGTGCATGTGAGAGAGGAGGATGAAGAGGTGGGTGAGGAAGAAGAGGATCAAGGAGTGGTGGGTTCCAGCTTGACCTTGGAGAGGGTGGCTGTGGCCAAACAATTCATTGAGAATCATTACAGGGCTCAGATGAAGCATATCCAAGAACGCAAGCAGAGGCGTTCAGTGCTACAAAAGCTGTTAGCATCTTCTCAAGTACCAGAAGAGGAACAGATCAATCAATTGAAGGATTTAGAGCGCAAGGAAACTGAGTATATTCGATTAAAAAGACATAAAATATGTGTTGATGATTTCGACCTTCTAACTATTATAGGCAGGGGAGCCTTTGGGGAGGTAAGACTCTGTCGGGAGAAGAAATCAGGCAATATATATGCCATGAAAAAGTTGAAAAAGTCTGAAATGCTCAGCAGGGGACAGGTTGAGCATGTTAGAGCTGAAAGGAATGTACTTGCAGAAGTTGCTTGTGACTGTATTGTGAAGCTCTATTACTCTTTTCAGGATGCTGAGCACTTATATCTCATTATGGAATATTTACCTGGTGGTGATATAATGACTTTGTTGATGAGGGAAGAAACTTTGACTGAAATTGTTGCTAGATTCTACATTGCTCAAAGTGTTTTGGCCATAGAGTGTATTCATGAACATAACTACATTCATCGAGATATAAAACCCGACAACCTTCTTTTGGACAAAAATGGTCACATGAAGCTGTCTGATTTTGGTCTTTGCAAGCCACTTGACTGCTCGAATCTATCATCTATTAATGAAAATGAAATCCTGGATGATGAAAACTTGAATGATACCATGGACGTTGATGGAACCTCAAATGGCAGAAATGGTAGGCGCTGGAAAAGTCCATTTGAACAACTTCAACATTGGCAAATAAACAGGAGGAAGTTGGCATTTTCCACTGTTGGAACACCAGACTACATTGCTCCTGAAGTGTTACTGAAAAAGGGTTATGGTGTGGAGTGTGACTGGTGGTCTCTTGGTGCTATAATGTATGAGATGCTTGTTGGTTATCCTCCATTTTACTCTGATGATCCCGTAACAACATGCAGAAAGATTGTGTACTGGAAAAACCACTTAAAATTTCCAGAGGAGGCCAGATTGACACCTGAAGCCAAGGATCTAATATGCAGGTTGCTTTGTGGTGTTCCACAAAGACTTGGTACCAGAGGAGCAGATGAAATTAAAGCTCATCCTTGGTTCAAAGATGTTGTATGGGACAAGCTCTACGGAATGGAGGCAGCATTTAAACCACAAGTCAATGGAGAGCTTGACACTCAGAATTTTATGAAATTTGATGAGGTTGAACTACCAAAACAAAGTAGAGGTGGATCTGGACCCATCAGAAAGATGCTCTTAACTTCTCAAGATCTCAATTTTGTTGGTTATACATATAAGAATTTTGCTGCAGTCAAGGGGATGCGTCAGTCTACTGAACAGGGGAGCTTGTCACCAAAGCGGTCATCAATTGACTCCACACAGAGTGATTCTGCAGTAGACTACTCCACCTGA 1542 0.415 MDDHEKEVHVREEDEEVGEEEEDQGVVGSSLTLERVAVAKQFIENHYRAQMKHIQERKQRRSVLQKLLASSQVPEEEQINQLKDLERKETEYIRLKRHKICVDDFDLLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVACDCIVKLYYSFQDAEHLYLIMEYLPGGDIMTLLMREETLTEIVARFYIAQSVLAIECIHEHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSNLSSINENEILDDENLNDTMDVDGTSNGRNGRRWKSPFEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVYWKNHLKFPEEARLTPEAKDLICRLLCGVPQRLGTRGADEIKAHPWFKDVVWDKLYGMEAAFKPQVNGELDTQNFMKFDEVELPKQSRGGSGPIRKMLLTSQDLNFVGYTYKNFAAVKGMRQSTEQGSLSPKRSSIDSTQSDSAVDYST* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2378 513 Pfam Protein kinase domain 107 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2378 513 Pfam Protein kinase domain 304 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2378 513 SMART pkinase_C_6 412 477 IPR000961 GO:0004674|GO:0005524|GO:0006468
Apr1g2378 513 MobiDBLite consensus disorder prediction 486 513 - -
Apr1g2378 513 SUPERFAMILY Protein kinase-like (PK-like) 88 456 IPR011009 -
Apr1g2378 513 MobiDBLite consensus disorder prediction 1 27 - -
Apr1g2378 513 ProSiteProfiles Protein kinase domain profile. 105 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2378 513 Gene3D Transferase(Phosphotransferase) domain 1 189 256 - -
Apr1g2378 513 Pfam Protein kinase C terminal domain 430 475 IPR017892 GO:0004674|GO:0005524|GO:0006468
Apr1g2378 513 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 12 512 - -
Apr1g2378 513 Gene3D Transferase(Phosphotransferase) domain 1 310 429 - -
Apr1g2378 513 Gene3D Phosphorylase Kinase; domain 1 68 188 - -
Apr1g2378 513 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Apr1g2378 513 CDD STKc_NDR_like 103 476 - -
Apr1g2378 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Apr1g2378 513 Gene3D Phosphorylase Kinase; domain 1 430 440 - -
Apr1g2378 513 PANTHER SERINE/THREONINE-PROTEIN KINASE 12 512 - -
Apr1g2378 513 SMART serkin_6 105 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2378 513 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2378 Apr-Chr1 33438272 33448934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2378 5 512 AGC Kinase Gene Family AT2G19400 75.195 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Apr1g2378 Pkinase 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2378 K08790 - gmx:100811359 892.878