Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2372 ATGGAACCTCGCGTTGGGAATAAGTTTCGGCTTGGCCGCAAGATCGGCAGCGGCTCGTTTGGAGAGATCTATTTAGGTACTAATATTCAAACAAATGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAAACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGTTGTACAGAGTTCTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGAGTAGAGGGAGATTACAATGTTCTCGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTCTTTAACTTCTGCAGCAGAAAGCTCTCACTAAAGACAGTTCTCATGCTTGCTGATCAGATGATCAACCGTGTGGAGTTTGTTCATTCAAAATCTTTTCTACATCGGGATATCAAACCTGATAATTTCCTCATGGGCTTGGGAAGGCGGGCAAACCAGGTTTATTGTATTGATTTTGGTTTGGCGAAGAAATATAGAGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAATAAGAATTTAACTGGGACTGCTAGATATGCTAGTATGAATACCCACCTTGGCATTGAACAAAGTCGAAGAGATGATTTGGAGTCTCTTGGTTATGTCTTGATGTACTTCTTGAGAGGAAGTCTCCCTTGGCAAGGACTTAAAGCAGGAACCAAGAAACAGAAGTACGAGAGAATCAGTGAAAAAAAGGTTTCTACCTCAATTGAGGCCTTATGTCGAGGTTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGCTCATTAAGGTTTGATGATAGGCCGGATTATGCTTATCTCAAAAGAATATTTCGTGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACCATCTTGAAGTATCAGCAATCACAGCTAGCCACTCCTCCGGTACGAGCCATTGGTCCCAGTGCTGGAACTAGTTCTGCAATGCCACCGGCTGTGACTAATGCTGATAGACAGACAGGAGAGGAAGAAGGGCAACCTCCTGGTGTGGTGTCGGTGGATTCCACAAGACGAAGAATGTCAGGCCCCATTTTAAATTCTGTAAATATTTCAAAGCAGAAAAATCCAGTCACCTCTGATGCTGCTGTTAATAAGGAAGCCATGTTATCAAGTACCAATATCCTGGGCCAGTCAAGTGGATCATCGAGGAAAGTTGCTGTTTCTAGTAGCCGTGATGTATTTGTTGGTACTGATTTGGATCTTCGTACTCGTACCACTGAGGCTAGCCCTGGAACAACACACAGAATTTCAAGTGGACATAGAAGTTCAGCACTTGGATCTTCAGATCCCAAGAAAGCAGTATCATCTGGAAGAAATGCTTCTCATGTCAAGAATTATGAAACTGCAGTCAAGGGCATTGAGGGTTTGCAATTAGAAAATGATGAGAGGGCCCATTATTAA 1428 0.4237 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRVLQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPVRAIGPSAGTSSAMPPAVTNADRQTGEEEGQPPGVVSVDSTRRRMSGPILNSVNISKQKNPVTSDAAVNKEAMLSSTNILGQSSGSSRKVAVSSSRDVFVGTDLDLRTRTTEASPGTTHRISSGHRSSALGSSDPKKAVSSGRNASHVKNYETAVKGIEGLQLENDERAHY* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2372 475 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2372 475 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2372 475 MobiDBLite consensus disorder prediction 413 452 - -
Apr1g2372 475 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Apr1g2372 475 Gene3D Transferase(Phosphotransferase) domain 1 1 317 - -
Apr1g2372 475 MobiDBLite consensus disorder prediction 413 453 - -
Apr1g2372 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Apr1g2372 475 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Apr1g2372 475 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2372 475 PANTHER CASEIN KINASE-RELATED 1 458 - -
Apr1g2372 475 CDD STKc_CK1_delta_epsilon 8 282 - -
Apr1g2372 475 PANTHER CASEIN KINASE I-LIKE 1 458 - -
Apr1g2372 475 MobiDBLite consensus disorder prediction 306 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2372 Apr-Chr1 33382806 33389535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2372 7 223 EF-hand Containing Proteins AT2G17890 25.778 5.19e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Apr1g2372 Pkinase 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2372 K02218 - gmx:100786777 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2372 1 33382806 33389535 Apr1g2372 1 33382806 33389535 ECH
Apr9g2504 9 32290650 32296574 Apr1g2372 1 33382806 33389535 PCT