Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2368 ATGTACTTCAGAAGCGGATTCTCGGACTCAAACAACGCCACAAACAGCGGTGTGTGCTGCACAGCCGCCACCAACAGTGGCGAAGCCCATTCAACTTCAAGCGCGTCAGACGTCACCGCGCTGAGGCGCCTCTCGGAGAATCTGGCCTCAATATTCGAGGCCAACAAAGGGGGCTTTGATTTTTTCTCTGACGCCAAGATCGTGGCCGGCGATGGGCGCGAATTCGGCGTGCACCGGTGCATTCTGGCAGCGAGGAGCGTGTTCTTCAAGAACGCGTTTGCGGGTGGCGGCATGCTCCGGTTGAAGGAGGTGGCGAAGGACTACGATGTTGGGTTTGAAGCGCTTGGGAGTGTTCTATCTTATTTGTACAGCGGCAGAGTGAAGGCTTTAGGCGAAGGTGAAAGTGGTGTTTGTGTTTGTGTTGATGATCAGTGTTCCCATTTTGGGTGTAGACCTGCTGTCGATTTCTTCGTTCAGTTGCTTTATGCTTCCTCTACTTTTCATATATATGAGTTGGTATCTCTTTATCAGGGACATCTACTAGACATTCTTGACAAGGTGGCAATAGATGACATTTTGGTGGTTCTTTCCATCGCAAACATATGTGGCAAAGCATGCGATACACTGCAAGCAAGGTGCACTGAGATAATTGTTAAATCCAATTTTGACATCACCACTCTAGAAAAAGCACTGCCACAACATGTGGTGAAACAAATCATGCAAAAACGCAAACAACTTGGCATGGAAATGCCCGAAATTTTCAACATTCCAGACAAACACGTAAACAGAATACACAGAGCACTGGATTCAGACGATGTGGAACTAGTGAGGTTGCTTTTGAAAGAGGGACACACTACTCTAGATGATGCTCATGCACTTCACTATGCTGTCGCATACTGTGATGTAAAAACCACTGCTGAGCTTCTTGATCTTGGTCTTGCTGATGTGAATCAAAAAAACCAAAGGGGTTATAGTGTGTTGCATGTTGCTGCGATGAGGAAAGAGCCTAAGATTATAGTGTCTCTTTTAACAAAAGGGGCTCAACCTTCTGATCTCACTTTGGACGGTAGAAAAGCCCTTCAGATTTCAAAGCGTTTAACCAAAGCTGTGGATTATTATAAGGCTACTGAGGAAGGCAAGGTGTCATGTAATGACAGATTGTGTATAGAGATATTGGAACAAGCTGAGAGAAGGGAACCTTTACATGGGGAGGCTTCTCTTTCTCTTGCTATGGCAGGGGATGATTTACGCATGAAATTGTTGTACCTAGAAAACAGAGTTGGATTGGCGAAAGTTCTGTTTCCTATGGAGGCAAAGGTTATTATGGATATTGCTCAAGTTGATGGCACATCTGAATTTCCATCAACAGACATTTACTGTCCATATATGCTTGATCACCAGAGGACAACTGTGGACTTAAATGATGCACCTTTCAGAATGAAGGAGGAGCATTTAGTTAGGTTAAGAGCACTGTCGAGAACTGTGGAGTTGGGAAAACGCTTCTTCCCACGTTGCTCAGAAGTGTTGAATAAGATAATGGATGCTGATGACCTATCTCAGCTTACATGTATGGGTGATGACAGTCCTGAAGATCGACTATGGAAGCGAAGAAGGTATGAGGAGCTCCAAGAGGTTCTCAATAAGGTCTTCAATGAGGACAAAGAGGAGTTTGATAGGTCTGCCATGTCATCATCATCCTCTTCCTCTTCAATAGGAGTGGTTAGACCCAATGGGCATGGCAAGCTAGCCATGAAGAATTAG 1761 0.4514 MYFRSGFSDSNNATNSGVCCTAATNSGEAHSTSSASDVTALRRLSENLASIFEANKGGFDFFSDAKIVAGDGREFGVHRCILAARSVFFKNAFAGGGMLRLKEVAKDYDVGFEALGSVLSYLYSGRVKALGEGESGVCVCVDDQCSHFGCRPAVDFFVQLLYASSTFHIYELVSLYQGHLLDILDKVAIDDILVVLSIANICGKACDTLQARCTEIIVKSNFDITTLEKALPQHVVKQIMQKRKQLGMEMPEIFNIPDKHVNRIHRALDSDDVELVRLLLKEGHTTLDDAHALHYAVAYCDVKTTAELLDLGLADVNQKNQRGYSVLHVAAMRKEPKIIVSLLTKGAQPSDLTLDGRKALQISKRLTKAVDYYKATEEGKVSCNDRLCIEILEQAERREPLHGEASLSLAMAGDDLRMKLLYLENRVGLAKVLFPMEAKVIMDIAQVDGTSEFPSTDIYCPYMLDHQRTTVDLNDAPFRMKEEHLVRLRALSRTVELGKRFFPRCSEVLNKIMDADDLSQLTCMGDDSPEDRLWKRRRYEELQEVLNKVFNEDKEEFDRSAMSSSSSSSSIGVVRPNGHGKLAMKN* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2368 586 PANTHER REGULATORY PROTEIN NPR3 4 580 IPR044292 GO:0009862|GO:2000022|GO:2000031
Apr1g2368 586 Pfam Domain of unknown function (DUF3420) 222 265 IPR024228 -
Apr1g2368 586 SUPERFAMILY Ankyrin repeat 257 364 IPR036770 -
Apr1g2368 586 Pfam Ankyrin repeats (many copies) 292 336 IPR002110 GO:0005515
Apr1g2368 586 Gene3D - 234 397 IPR036770 -
Apr1g2368 586 SMART BTB_4 63 184 IPR000210 GO:0005515
Apr1g2368 586 ProSiteProfiles Ankyrin repeat profile. 322 354 IPR002110 GO:0005515
Apr1g2368 586 CDD BTB_POZ_NPR_plant 42 184 - -
Apr1g2368 586 SMART ANK_2a 259 287 IPR002110 GO:0005515
Apr1g2368 586 SMART ANK_2a 288 318 IPR002110 GO:0005515
Apr1g2368 586 SMART ANK_2a 322 351 IPR002110 GO:0005515
Apr1g2368 586 Pfam NPR1/NIM1 like defence protein C terminal 364 569 IPR021094 -
Apr1g2368 586 Gene3D Potassium Channel Kv1.1; Chain A 28 219 IPR011333 -
Apr1g2368 586 MobiDBLite consensus disorder prediction 556 586 - -
Apr1g2368 586 Pfam BTB/POZ domain 61 128 IPR000210 GO:0005515
Apr1g2368 586 PANTHER REGULATORY PROTEIN NPR2 4 580 - -
Apr1g2368 586 ProSiteProfiles BTB domain profile. 63 131 IPR000210 GO:0005515
Apr1g2368 586 SUPERFAMILY POZ domain 60 181 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2368 Apr-Chr1 33349328 33354494 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Apr1g2368 NPR1_like_C 1.5e-88 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2368 K14508 - gmx:100800032 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2368 1 33349328 33354494 Apr1g2368 1 33349328 33354494 ECH