Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2367 ATGGTGGTTCCTCACGGTAAGGCTCCACCAATAATGGAAGAAGAAGGTAAAGCGAAAGCAGAGGAAGTAGACAACGCTGGTTGTGAGAACGACGACGTTTTGGTTGAGTCCCCGAAAGGGATTGTGGTGGGGCCAGCAGCGTTCCTGAAAAAGACGTTTGACATGGTGGAGGATCCGAATACCGACCCGATTGTGTCATGGGGGGAAGGACGTTACAGTTTCGTGGTTTGGGATTCTCAGAAATTCTCCAAAACCCTTCTTCCAAAGTATTTCAAGCACACCAATTTCTCAAGCTTCATTCGCCAGCTTAACACCTACGGATTTAGGAAGGTTGATTCAAAACGTTGGGAGTTTGCAAATGAAGGGTTTCAGGGAGGGAAGAAGTATTTGTTGAAGCATATCAGAAGGAGAAGCAAGTGTAACAAAGCATTCGACTCCATGAAGCTTGGACTGGAGGATGAAGTTGAACAACTCAAGAAGGATCAGAAAATGTTAAAAGTGGAGATTCTGAAGCTCACGCAGAAGCATAAGGATTCACAGGTTCAACTGGCCAGTGTTGAGGAGCGAGTTCGATGTGCAGAGTTGAAGCAGTTTCAGATGCTAGTTTTCCTCACCAGAATGACCAAAAGGCCTGCTTTTGTTGAGCAATTAATGCACAAGGTGAAGCAAAAAGGGGAGCTTGATGGGGCAGGCATGGTTAAGAGACCCAAATTGGACACCACCGATGTGGATTATGGACACCAAGGTTGTGAACAATTGAATACATTGCAATCTGAACAAAATGGACCCTTGGAAAATGTTTCATGCAGCTCTGTGCATGAGTTAAGGCCTATTGGGTATGATGTGTCCTATGCTTATGATGTCATGTCTGACAAACTAATGGGGGAGAGTTCTGGTGTTGGTGAAGAAGTGGATGTGAAGGGCTCAAATATCTACTTTGAATTAGAGGATTTGATAAGTAAACCAGCCGATTAG 975 0.4472 MVVPHGKAPPIMEEEGKAKAEEVDNAGCENDDVLVESPKGIVVGPAAFLKKTFDMVEDPNTDPIVSWGEGRYSFVVWDSQKFSKTLLPKYFKHTNFSSFIRQLNTYGFRKVDSKRWEFANEGFQGGKKYLLKHIRRRSKCNKAFDSMKLGLEDEVEQLKKDQKMLKVEILKLTQKHKDSQVQLASVEERVRCAELKQFQMLVFLTRMTKRPAFVEQLMHKVKQKGELDGAGMVKRPKLDTTDVDYGHQGCEQLNTLQSEQNGPLENVSCSSVHELRPIGYDVSYAYDVMSDKLMGESSGVGEEVDVKGSNIYFELEDLISKPAD* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2367 324 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 27 308 - -
Apr1g2367 324 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g2367 324 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g2367 324 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g2367 324 Coils Coil 148 189 - -
Apr1g2367 324 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g2367 324 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g2367 324 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g2367 324 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 308 IPR027725 -
Apr1g2367 324 SUPERFAMILY "Winged helix" DNA-binding domain 45 137 IPR036390 -
Apr1g2367 324 Gene3D - 43 138 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2367 Apr-Chr1 33343914 33345880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2367 43 241 HSF AT2G26150 49.524 1.50e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr1g2367 HSF_DNA-bind 8.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2367 K09419 - gmx:100778060 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2367 1 33343914 33345880 Apr1g2367 1 33343914 33345880 ECH