Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2363 ATGGAAGGTGTCTTCTCCCTCCCTGTAGCCGCCAGAACTGATTTTATCCACTCTCTAGTGCAATCTTTTGGCTGCAGTTACATTTGTCTATGGGAATATGATTCCATTTCACCCAATCGCTTGTCCTTCTTGGATGGCTTCTACAATGTAAGAAACAACCAACCAAGCTCTAGTTTGGGCACTGTACCACAAAGGCTTTTCAATCAGTTCCGGAGTTTAACATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAATCAACGTCCTTACGTAGAGTTGCAACAATTAGAACTTCTGAGACTGGCCTCCACAGAAATACAAGCACAATTCTTTCAGGAAGCAAGGATTAAGACTGCTGTTTTCATGGGGTGTAACAAAGGGGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAGCAGCACTTAGGAGTTTGTTTCCTGAAGATTTTTCTAGACAGTCTCAACAAATTGATCAAAACCCACCTTCATCATCTTCATCTTCTTTGAGATCAATATCCACAGGAAGCCCTGAATACTCATCTCTGCTATTCAGTATTCCTGCCACTTCTCAATCACACTTTCCAGAGACCCTTGGAGGAGTAGTGCCCCCAATGCAACCTGTGCCAAACACAGCCACTAGCCAACACCACCAAGCCATCCAAGCATTGGCACAAGTAGTCCCTCCAACCCAGTTCCCCACATCAGAAAATGATGCAATCATGAGAGCAATCCTCCATGTTCTATCTCCACCTTCTTCTCATCAGCATCAAAATTTGCCTTATGCTTCTGTTGTGCATCCAGAAGCTAGTGCTTTCCAAAGATATAGACCAGACTTAGGCCCCAATATGACACCCCAAATGGGGTCCAATTTCAGAAGGCAAAGCCTTATGAATAGATCATTTGCATTTTTTAGAAGCTTAAATTTTATGAGAATGAGAGAACGCATTCAAGCAACTTCCCGTCCCACTAATACCCAGCTTCATCATATGATATCAGAAAGAAGAAGGCGTGAGAAATTAAATGAAAATTTCCAAGCACTTAGAGCACTACTTCCTCCAGGAACAAAGAAAGACAAAGCGTCAATACTAACAACAGCAAAGGAGACATTGAGCTCTTTGATGGCTGAAGTTGATAAACTAAGTAAAAGAAATCAAGAGTTGACATCAATTTTACCAGCCAAAGAATCTACAACGACTGCTGAAACCATGGCTAGTTTATCATCAAATGAAAGATTAAATGTCCGAGTTTCACATGTACCAGAATCAAGCTCATCTGAAGAGCGAATGGTGGACTTGCAAGTGAATGTGAGAGGACAAATTTCTCAAATTGACATATTGATTAGCTTATTGGAATTCTTAAAACGGGTTCATCACGTGAACTTGGCTTCCATGGATGCAAACACCCATAATATTGGAGAAGGAAATGCCCTTCATCGTCTAACCTTCAGACTAAGTATCATTCAGGGAAGTGAATGGGACGAGGCTGGTTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTCCTACAGAACCAAGTGGACCATTAA 1566 0.4163 MEGVFSLPVAARTDFIHSLVQSFGCSYICLWEYDSISPNRLSFLDGFYNVRNNQPSSSLGTVPQRLFNQFRSLTFDVNDDRVPGLAFRNQRPYVELQQLELLRLASTEIQAQFFQEARIKTAVFMGCNKGEIELGFLNMSQVDIQAALRSLFPEDFSRQSQQIDQNPPSSSSSSLRSISTGSPEYSSLLFSIPATSQSHFPETLGGVVPPMQPVPNTATSQHHQAIQALAQVVPPTQFPTSENDAIMRAILHVLSPPSSHQHQNLPYASVVHPEASAFQRYRPDLGPNMTPQMGSNFRRQSLMNRSFAFFRSLNFMRMRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILTTAKETLSSLMAEVDKLSKRNQELTSILPAKESTTTAETMASLSSNERLNVRVSHVPESSSSEERMVDLQVNVRGQISQIDILISLLEFLKRVHHVNLASMDANTHNIGEGNALHRLTFRLSIIQGSEWDEAGFQEAVRRVVADFLQNQVDH* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2363 521 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 514 IPR044658 -
Apr1g2363 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983
Apr1g2363 521 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 514 - -
Apr1g2363 521 CDD bHLH_AtbHLH_like 335 387 IPR045239 -
Apr1g2363 521 Coils Coil 369 396 - -
Apr1g2363 521 SMART finulus 336 385 IPR011598 GO:0046983
Apr1g2363 521 MobiDBLite consensus disorder prediction 157 179 - -
Apr1g2363 521 Coils Coil 336 356 - -
Apr1g2363 521 Pfam Helix-loop-helix DNA-binding domain 334 379 IPR011598 GO:0046983
Apr1g2363 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 395 IPR036638 GO:0046983
Apr1g2363 521 Gene3D - 329 404 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2363 Apr-Chr1 33315654 33319839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2363 12 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.199 9.66e-105 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g2363 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2363 - - gmx:100798452 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2363 1 33315654 33319839 Apr1g2363 1 33315654 33319839 ECH
Apr9g2510 9 32330662 32335004 Apr1g2363 1 33315654 33319839 PCT