Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2352 ATGTTTTATGTGTACGAATCCATGACACCAACTGATTGTTATTCAGTGTCTTCTCCTATGCCTTTAGATCTTAATGAAGATCGCACCCATCAGCTCTTTAGTGCAAATCATCAAGCCTCTTCTTCATCTTCTTCTTTATCTTATTCTATATTCTTTAACCCAGATATTGATCAAGGAGGATCTTGCTATTGGGAATCCAAGCATTTACAAAGTGATGAAGAGGCCAAGAAGATTATTCCTTCTAGCAGATCATGGGATCATCCATCAGCGGAAAAGGATGAAAGAATAAGTGATCTGAAGGTGATGGTATGGAAGAAAGAAGATGGGTATGAAAATCTTCAACGAGAAGATAGTTCAGTGAAGTGGATGCCTTCAAAGATGAGAATGATGCGAAGAATGATGGTATCAGGTTTTGATATTGTAGGCACATCTAAGAAGTATGAAGAGAAAAAATCACTATTATCACCTCAAGAAGTTTATTATAGCAGCAACAATTCTTCTTCAAACAACAGCAACATCCCTGTTAGGGTTTGTTCTGATTGCCAGACCACTAAGACCCCTCTCTGGAGGAGTGGACCAAAAGGTCCAAAGTCACTTTGTAACGCATGCGGGATTCGACAAAGGAAGGCAAGACATGCCATTGCCGCGGCTGCAAATGCAAATGGAACGATTCTTATGGATGCTAAGAATGAGAAATCTCATGTGAAGAAGGGAAGCAAGTTTCGAAACAAAGGGACGAAGAAGTCCAAAACTGAGTGCACACCACAGTTGAAAAAGAAGCGGAAACTTGGAGCCAAAGCGTGTGTAGATAGAAAGAGGTTCAATACATTTGAGGATTTGACAATAAGCTTGAGTAAGAACTTGGCATTCCAACAAGTTTTCCCTAAGGAAGAGAAAGAGGCTGCAATCTTGCTCATGGCTTTATCTTATGGCCTGCTTCATGGCTTTCCCTCAGATCGTTACTTATGA 969 0.4035 MFYVYESMTPTDCYSVSSPMPLDLNEDRTHQLFSANHQASSSSSSLSYSIFFNPDIDQGGSCYWESKHLQSDEEAKKIIPSSRSWDHPSAEKDERISDLKVMVWKKEDGYENLQREDSSVKWMPSKMRMMRRMMVSGFDIVGTSKKYEEKKSLLSPQEVYYSSNNSSSNNSNIPVRVCSDCQTTKTPLWRSGPKGPKSLCNACGIRQRKARHAIAAAANANGTILMDAKNEKSHVKKGSKFRNKGTKKSKTECTPQLKKKRKLGAKACVDRKRFNTFEDLTISLSKNLAFQQVFPKEEKEAAILLMALSYGLLHGFPSDRYL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2352 322 Pfam GATA zinc finger 178 212 IPR000679 GO:0006355|GO:0043565
Apr1g2352 322 ProSiteProfiles GATA-type zinc finger domain profile. 172 208 IPR000679 GO:0006355|GO:0043565
Apr1g2352 322 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 8 315 - -
Apr1g2352 322 CDD ZnF_GATA 177 209 IPR000679 GO:0006355|GO:0043565
Apr1g2352 322 MobiDBLite consensus disorder prediction 232 252 - -
Apr1g2352 322 SMART GATA_3 172 224 IPR000679 GO:0006355|GO:0043565
Apr1g2352 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 213 - -
Apr1g2352 322 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 8 315 - -
Apr1g2352 322 Gene3D - 176 213 IPR013088 GO:0006355|GO:0008270
Apr1g2352 322 ProSitePatterns GATA-type zinc finger domain. 178 203 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2352 Apr-Chr1 33173606 33175368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2352 118 315 C2C2-Gata Transcription Factor Family AT4G26150 35.135 6.07e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr1g2352 GATA 7.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2352 - - gmx:100792098 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2352 1 33173606 33175368 Apr1g2352 1 33173606 33175368 ECH
Apr9g2524 9 32444658 32446473 Apr1g2352 1 33173606 33175368 PCT