Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2349 ATGGAAGATGATGAGGCATGCATCACAAGCCTAAGTCTTGGACTTGGATTAGAAGGGTATGTACCAAAGAAGGAAAAGCAGAATATAAACAAGCCACTGCCTTGTTTGGACCTAACGATTGAGCTTTGTCCAAAAGGGGAAGCCATAGAGGTGGATCAACAGCATCATAAGGCCGAAGGATCGATTTTGAAGGACCCAAATGAAAGGAGTCCTGAAAACAACAATCGCTATAACGGTAGCAGAAAGAAGCTGAAGCTTACAAAGGAGCAATCAGCCACGTTGGAGAATAACTTCAAGCTGCACACCACTCTTAACCTTGTACAGAAACAGGCACTTGCAGAGCAATTGAATTTAAAGCATAGGCAAGTTGAAGTTTGGTTTCAGAACCGAAGAGCAAGGACCAAGCTGAAACAAACAGAGGTAGATTGCGAGTTTTTGAAGAAATGCTGTAAAAAACTAAGCGAAGAGAACCAAAGGTTGAAGAAGGAATTGCAAGAGCTACGAGCACTAAAAGTTGGACCGTCCCCCCTGCACATTCAACTGTCCAAGGCTACAACCTTAACCTTATGTTCATCGTGCGAGGGGCTATTGAAGCCCAATGAAGGAAACAAAGCAACCGTTTCCGATGTGGTCCGAAACAACCATCACAAATTGCAAAGCAGCATAGAATTAGAGGGCATTTAG 684 0.4357 MEDDEACITSLSLGLGLEGYVPKKEKQNINKPLPCLDLTIELCPKGEAIEVDQQHHKAEGSILKDPNERSPENNNRYNGSRKKLKLTKEQSATLENNFKLHTTLNLVQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCKKLSEENQRLKKELQELRALKVGPSPLHIQLSKATTLTLCSSCEGLLKPNEGNKATVSDVVRNNHHKLQSSIELEGI* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2349 227 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9-LIKE 6 197 - -
Apr1g2349 227 Coils Coil 136 170 - -
Apr1g2349 227 Gene3D - 78 142 - -
Apr1g2349 227 PANTHER - 6 197 - -
Apr1g2349 227 MobiDBLite consensus disorder prediction 56 80 - -
Apr1g2349 227 SUPERFAMILY Homeodomain-like 67 138 IPR009057 -
Apr1g2349 227 CDD homeodomain 81 138 IPR001356 GO:0003677
Apr1g2349 227 SMART HOX_1 79 141 IPR001356 GO:0003677
Apr1g2349 227 Pfam Homeobox associated leucine zipper 137 170 IPR003106 GO:0006355|GO:0043565
Apr1g2349 227 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Apr1g2349 227 Pfam Homeodomain 81 135 IPR001356 GO:0003677
Apr1g2349 227 SMART halz 137 180 IPR003106 GO:0006355|GO:0043565
Apr1g2349 227 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2349 Apr-Chr1 33141079 33142418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2349 80 209 Homeobox Transcription Factor Family AT4G37790 66.154 5.13e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr1g2349 Homeodomain 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2349 K09338 - gmx:100790522 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2531 9 32507945 32509298 Apr1g2349 1 33141079 33142418 PCT