Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2345 ATGGCAATAGATATGATAGATGTTCACAAGATGAGAATGGAAGAAAACATATCCATACAAGAAGCTGCTTCAGCTGGGTTGAAGAGCATGGAGCATCTCATTCGAGTCCTTTCTTCTTCATCTTGCAATTTTTCTACTCCACACAACAACCTTAATCTTAACAATCTCGACTGCTCCGAAATCACCGACTTCACCGTTTCTAAGTTTAAACAGGTTATTAACCTGTTGAATCGCACCGGACACGCCCGGTTCCGCCGCGCCCCACCCCAACCCCAGGCACAACCTCAGCTACAACCACAACAAGATCAACCTCGGATTCAGGGGCTAGATTTTGCTAAATCTACGATTCTCAATACCAAGTCCAACAACAAGGATGATACTCTCACCATGTCCACCACTACTTCCTCCTTCATGTCCTCCGTCACCGCCGACGCCAGCGTCTCCGACGGCAAGATTGGCCCCTTCATCCCTCCCTCCGCCTCCAAGCCCCCTCTCTCCTCCTCTCACCGCAAAAAGTGCCACGACGCCGCACTCTCCGCCAAAACCTCCTGCCATTGCTCCAAGAAAAGGAAATCACGTGTGAAACGAACGATTCGCGTGCCGGCGATTAGCTCGAAGATCGCCGATATCCCACCGGACGAGTACTCTTGGAGAAAGTATGGTCAAAAACCGATCAAGGGTTCACCTTACCCTCGTGGGTATTACAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAGCATGTGGAGCGAGCTCAAGATGATCCCAAGATGTTGATTGTAACGTACGAGGGTGAGCACAGTCACTCGCTGCCGTCAATAGCCACAGCCGGCGTTGGCTTAATCCTCAACTCCAGTTAA 861 0.5099 MAIDMIDVHKMRMEENISIQEAASAGLKSMEHLIRVLSSSSCNFSTPHNNLNLNNLDCSEITDFTVSKFKQVINLLNRTGHARFRRAPPQPQAQPQLQPQQDQPRIQGLDFAKSTILNTKSNNKDDTLTMSTTTSSFMSSVTADASVSDGKIGPFIPPSASKPPLSSSHRKKCHDAALSAKTSCHCSKKRKSRVKRTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHSHSLPSIATAGVGLILNSS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2345 286 ProSiteProfiles WRKY domain profile. 206 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g2345 286 SUPERFAMILY WRKY DNA-binding domain 209 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g2345 286 SMART WRKY_cls 211 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g2345 286 MobiDBLite consensus disorder prediction 85 104 - -
Apr1g2345 286 Pfam Plant zinc cluster domain 170 209 IPR018872 -
Apr1g2345 286 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 9 275 - -
Apr1g2345 286 MobiDBLite consensus disorder prediction 153 174 - -
Apr1g2345 286 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 275 IPR044810 GO:0003700
Apr1g2345 286 Pfam WRKY DNA -binding domain 213 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g2345 286 Gene3D WRKY domain 197 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2345 Apr-Chr1 33108106 33109911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2345 1 269 WRKY Transcription Factor Family AT2G24570 50.962 8.76e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g2345 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2345 - - gmx:100127391 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2345 1 33108106 33109911 Apr1g2345 1 33108106 33109911 ECH
Apr9g2537 9 32548395 32549858 Apr1g2345 1 33108106 33109911 PCT