Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2337 ATGAGTTTCCTGAATGGTTCTTCACCACGGCGGCATGCGGCGGAGAATGATTTAGAGGCTGGTCCCGCCACTCGCCGCTCTGCCGACATCGACGACCCCGGCGATTTTTCCGATCCGTTTGATATTGCCAGAACAAAGAACGCTTCGATTGAACGCCTCAGGCGCTGGAGGCAAGCGGCACTTGTACTTAACGCTTCTCGCCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAGCAAATATTGAGAAAGATTAGAGCACATGCACAAGCCATTAGAGCAGCTTATCTTTTCAAAGCTGCTGGTAGGGAGGGGGGGCAACTTAGTGAAACTGTTATTCCTCCTCCAACCCCCATTGCTGGTGAATTTCCAATTGGACAAGAGCAACTTGCTTCAATTTCAAGGGAGCATGATACTGCTGCTCTGCAGCAATATGGAGGGGTTGCAGGGATATCGAATTTGTTGAAAACCAATTTAGAGAAGGGGATTCATGGTGATGATGCAGACTTACTAAAACGGAGGAATGCATTTGGTTCCAACAATTATCCGCGAAAGAAAGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGACCTGACCTTGATTATTTTGATGGTAGCTGCTGCGGCTTCATTGGCACTGGGTATAAAATCTGAGGGTATTACAGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTCACAGCTATTAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACCTGGAGGTTATTAGAGGTGGCAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGATGTTATACCTCTTAATATTGGTAACCAGGTCCCGGCTGATGGAATTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCAAGTATGACAGGGGAGAGCAAAATTGTTCATAAGGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCTGATGGCAGTGGCACTATGCTGGTAACTGGTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTGTAGCCACTTTCATTGGTATTGTTGGACTCTCTGTTGCTGTTATTGTCCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCACACAAAAAACGCGGATGGGAGTGTTCAATTTAGAGCAGGCAGGACTAAAGTTGGTGATGCTATTGATGGAGCAATTAAGATAGTAACTGTTGCGGTCACCATTGTTGTGGTTGCGGTACCTGAGGGGCTCCCATTAGCAGTTACATTGACACTGGCCTACTCAATGAGAAAAATGATGGCAGATAAAGCTTTGGTAAGGAGGCTTTCTGCCTGTGAGACAATGGGCTCTGCCACAACCATATGCAGTGATAAGACTGGCACATTGACCATGAATCTGATGACTGTGGTTGAGGCTTATGCGGGGGGTAAGAAAATTGATCCTCCTCACAAGTTGGAGTCCTTTCCTATGCTTCGCTCTCTACTGATTGAAGGTGTTGCACAGAACACTAATGGCAGTGTTTATGCACCTGAGGGTGCTAGTGATGTCGAGGTTTCGGGATCACCAACAGAAAAAGCAATTTTACAGTGGGCTATACAGCTTGGGATGAATTTTACGGCTGCTAGATCAGAATCATCCATTATTCATGTCTTTCCATTCAATTCAGAGAAAAAAAGAGGGGGAGTTGCAATTCAGACGGCTGACTCTGGCATCCATATACATTGGAAAGGTGCTGCTGAGATAGTTCTAGCCTGCTGTACAGGGTATATCGATGCAAATGACCAGTTAGTGGAGATGGATGAGGAGAAGATGACATTTTTCAAAAAAGCTATTGAAGACATGGCTGCTGATAGCCTACGTTGTGTTGCCATTGCATATAGATCATATGAAAAGGAGAAAGTTCCAACTAATGAAGAACTACTTGCTCACTGGTCTTTACCAGAAGATGATCTTGTTTTACTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCATCTTTGCCAAAAAGCTGGGGTTAAGGTAAAAATGGTCACTGGCGACAATGTGAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTAATTCATTTGCTGATGCTACAGAGCCAAACATCATTGAAGGAAAAACATTTCGTGCCTTGTCAGATGCAGAGAGAGATGAAATTGCTGAAGCAATATCGGTTATGGGACGGTCATCTCCTACTGACAAACTGTTGCTAGTACAAGCATTGAGAAGGAAGGGTCATGTTGTGGCTGTAACAGGGGATGGAACAAATGATGCTCCTGCACTTCATGAGGCTGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCAGCTCTGGTTATAAATGTTGTTGCTGCAGTTTCATCTGGTGATGTCCCACTAAATGCAGTTCAGCTTCTCTGGGTAAATCTTATTATGGATACTCTGGGAGCACTAGCCTTGGCAACTGAACCACCAACTGACCATCTTATGGATCGAACTCCAGTGGGTCGAAGAGAACCTCTCATAACCAATATTATGTGGAGGAATTTGCTGATACAGGCAATGTACCAAGTGTGTGTCTTGCTTGTTCTCAACTTTCGAGGTAGGAGCATACTGGGTCTGAGCCATGTCCAGAATGACCATGCTGTCACAGTGAAGAACACACTGATATTCAATGCATTTGTTCTCTGTCAAATCTTTAATGAATTTAATGCACGAAAGCCAGACGAGTTCAACATATTTAAAGGAGTCACGAGAAACTACCTCTTTATGGGTATAATTGGATTAACTGTTGTGCTTCAGATTGTCATCGTTGAATTTCTTGGGAAGTTCACTTCAACAGTCAGACTTAATTGGAAACAGTGGCTCATCTCTGTCATCATTGGATTTATTAGTTGGCCTCTTGCTGTGATTGGGAAACTGATACCAGTGCCAGCAACTCCCATCAATAACGTTTTTTCAAGGTTACATGATCAAACTTCTAGAAGGAAGGAAACTGAGGATTCTCAATAG 3267 0.431 MSFLNGSSPRRHAAENDLEAGPATRRSADIDDPGDFSDPFDIARTKNASIERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGREGGQLSETVIPPPTPIAGEFPIGQEQLASISREHDTAALQQYGGVAGISNLLKTNLEKGIHGDDADLLKRRNAFGSNNYPRKKGRSFLMFMWDACKDLTLIILMVAAAASLALGIKSEGITEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVIVLIVLLARYFSGHTKNADGSVQFRAGRTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNLMTVVEAYAGGKKIDPPHKLESFPMLRSLLIEGVAQNTNGSVYAPEGASDVEVSGSPTEKAILQWAIQLGMNFTAARSESSIIHVFPFNSEKKRGGVAIQTADSGIHIHWKGAAEIVLACCTGYIDANDQLVEMDEEKMTFFKKAIEDMAADSLRCVAIAYRSYEKEKVPTNEELLAHWSLPEDDLVLLAIVGLKDPCRPGVKDAVHLCQKAGVKVKMVTGDNVKTAKAIAVECGILNSFADATEPNIIEGKTFRALSDAERDEIAEAISVMGRSSPTDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVCVLLVLNFRGRSILGLSHVQNDHAVTVKNTLIFNAFVLCQIFNEFNARKPDEFNIFKGVTRNYLFMGIIGLTVVLQIVIVEFLGKFTSTVRLNWKQWLISVIIGFISWPLAVIGKLIPVPATPINNVFSRLHDQTSRRKETEDSQ* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2337 1088 SFLD p-type atpase 473 850 IPR044492 -
Apr1g2337 1088 ProSitePatterns E1-E2 ATPases phosphorylation site. 493 499 IPR018303 -
Apr1g2337 1088 PRINTS P-type cation-transporting ATPase superfamily signature 315 329 - -
Apr1g2337 1088 PRINTS P-type cation-transporting ATPase superfamily signature 491 505 - -
Apr1g2337 1088 PRINTS P-type cation-transporting ATPase superfamily signature 691 702 - -
Apr1g2337 1088 PRINTS P-type cation-transporting ATPase superfamily signature 713 723 - -
Apr1g2337 1088 PRINTS P-type cation-transporting ATPase superfamily signature 798 817 - -
Apr1g2337 1088 PRINTS P-type cation-transporting ATPase superfamily signature 822 834 - -
Apr1g2337 1088 SUPERFAMILY HAD-like 489 903 IPR036412 -
Apr1g2337 1088 MobiDBLite consensus disorder prediction 1 41 - -
Apr1g2337 1088 Gene3D - 199 1052 - -
Apr1g2337 1088 SFLD C1.7: P-type atpase like 473 850 - -
Apr1g2337 1088 Pfam Ca2+-ATPase N terminal autoinhibitory domain 38 80 IPR024750 GO:0005516
Apr1g2337 1088 Pfam Cation transporter/ATPase, N-terminus 149 216 IPR004014 -
Apr1g2337 1088 PANTHER CATION TRANSPORTING ATPASE 37 1077 - -
Apr1g2337 1088 Pfam haloacid dehalogenase-like hydrolase 488 812 - -
Apr1g2337 1088 PANTHER CALCIUM-TRANSPORTING ATPASE 37 1077 - -
Apr1g2337 1088 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 432 514 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2337 1088 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 765 878 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2337 1088 CDD P-type_ATPase_Ca_PMCA-like 173 931 - -
Apr1g2337 1088 Gene3D - 501 698 IPR023299 GO:0000166
Apr1g2337 1088 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 703 IPR023299 GO:0000166
Apr1g2337 1088 MobiDBLite consensus disorder prediction 12 41 - -
Apr1g2337 1088 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 1062 IPR023298 -
Apr1g2337 1088 Pfam E1-E2 ATPase 269 469 - -
Apr1g2337 1088 Gene3D - 488 843 IPR023214 -
Apr1g2337 1088 SUPERFAMILY Calcium ATPase, transduction domain A 269 364 IPR008250 -
Apr1g2337 1088 PRINTS Sodium/potassium-transporting ATPase signature 234 254 - -
Apr1g2337 1088 PRINTS Sodium/potassium-transporting ATPase signature 484 505 - -
Apr1g2337 1088 PRINTS Sodium/potassium-transporting ATPase signature 609 627 - -
Apr1g2337 1088 Gene3D - 172 367 - -
Apr1g2337 1088 Pfam Cation transporting ATPase, C-terminus 883 1060 IPR006068 -
Apr1g2337 1088 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 139 1062 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Apr1g2337 1088 Gene3D - 48 103 - -
Apr1g2337 1088 SMART Cation_ATPase_N_a_2 147 221 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2337 Apr-Chr1 33034035 33049915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2337 1 1069 Primary Pumps ATPases AT5G57110 74.790 0.0 1611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2337 K01537 - gmx:100792945 1924.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2337 1 33034035 33049915 Apr1g2337 1 33034035 33049915 ECH
Apr9g2542 9 32590404 32609808 Apr1g2337 1 33034035 33049915 PCT