Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2330 ATGGAGAATTGTGATGAGTACAAGCATTACTGGGAAACCAACATGTTCCTCCAAACCCAAGAGTTTGACAGTTGGGGATTGGATGAAGCCTTATCGGGGTACTATGATTCGAGTTCCCCCGATGGCGCGGCTTCATCGGCGGCGTCTAAGAACATTGTTTCCGAGAGGAATAGGAGGAAGAAACTCAACGAAAGGCTTTTTGCGCTTAGATCGGTGGTCCCTAATATTAGCAAGATGGATAAGGCTTCAATAATCAAGGATGCTATCGAGTACATCCAGCACTTGCATGAGCAAGAGAAGATTATCCAAGCTGAGATAATGGAGCTTGAATCTGGGATGCCAAAGAAGAGTCCTAGCTATGACTTTGAGCAAGATACAAGAAACTCCCCAATTGAAGTGCTTGAGCTGAGGGTTACATACATGGGTGAGAAGACTGTTGTGGTGAGCTTGACATGTAGCAAGAGGACAGACACAATGGTGAAACTGTGCGAAGTGTTTGAATCTTTGAAGCTGAAGATCATCACTGCTAACATCACTTCGTTTTCAGGGAGGCTTTTGAAGACGGTCTTCCTTGAGGCAAACGAAGAAGAGAAAGATCTTTTGCAGATAAAGATCCAGACAGCGATTGCAGCCCTTAATGACCCTCTAAGTCCAATGAGTATATGA 666 0.4459 MENCDEYKHYWETNMFLQTQEFDSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKIIQAEIMELESGMPKKSPSYDFEQDTRNSPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFLEANEEEKDLLQIKIQTAIAALNDPLSPMSI* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2330 221 PANTHER TRANSCRIPTION FACTOR BHLH35 5 215 - -
Apr1g2330 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Apr1g2330 221 Gene3D - 42 112 IPR036638 GO:0046983
Apr1g2330 221 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 215 - -
Apr1g2330 221 Coils Coil 191 211 - -
Apr1g2330 221 Pfam Helix-loop-helix DNA-binding domain 53 96 IPR011598 GO:0046983
Apr1g2330 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 112 IPR036638 GO:0046983
Apr1g2330 221 SMART finulus 52 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2330 Apr-Chr1 32907924 32913963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2330 6 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.734 7.55e-87 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g2330 HLH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2330 - - gmx:100817978 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2330 1 32907924 32913963 Apr1g2330 1 32907924 32913963 ECH
Apr9g2549 9 32716152 32721976 Apr1g2330 1 32907924 32913963 PCT