Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2329 ATGACCGAACAAACCAAGTTCAGCATCTTGTGCAGCCTATTCACGTGGACGCAGAGAACCAAATCGCCGGCGAAGAAACGAGCCAAGTTTCGCAAGTTCCTCGACTCATTCTGCACCGATCACAACTACTTCGCCGCCATTCGCCTCCTTCTCCCTAACCTCGATCGCGAGCGTGGCTCCTACGGTCTCAAGGAGTCCGTGCTCGCCACCTCCCTCATCGACGCTCTCGGCATGTCACGTGACTCCCCCGATGCCATTCGCCTTATCAATTGGCGCAAAGGCGGTGCATCCTCCGGCGCCAGTGCCGGCAATTTCGCCCTTGTCGCCACCGAGGTGCTGCAGCGTAGGCAAGGGATGGCTTCCGGTGGATTAACGATAAAGGAGTTGAATGAGTTGCTTGATCGGTTGTCTTCCAGTGAAAACAGGGCTGAGAAAACTTTGGTCCTTTCTACTCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCTTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAGTTCCATCCTGATGCGGAAGACTTGTTTAATGTTACCTGTGACTTAAAATTAGTCTGTGAAAAGCTAAGGGATCGCAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGTCCCCAATTAGCTAAGAGAGTTGCAAATGCAGCTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGTGACCGTATTCAAATTCATAAAAATGGGACTGAGATACATTTCTTCTCAAGGAACTTTCTTGATCACTCTGAATATGCACATGCGATGTCTGAAATCATAATACAAAATGTTATTGTTGATAGGTGCATCCTTGATGGTGAAATGTTGGTGTGGGACAAGTCTTTGAATCGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGATAGTGATAGACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTGATTCATCAAACTTTGAAGGAACGGCATGCAATTCTATGTAAAGTTGTAAGGCCAATGAAGGGTCGCTTGGAAATATTGGTGCCTAGTGGTGGTATCAATAGTCGTTGTTCTTCTGGTGAACCTTGTTGGTCATTTATTGCTCATAATGTGGATGAAGTTGAGAGATTTTTCAAAGAAACAATTGAAAATAGAGATGAGGGCATTGTTGTAAAAGACCTCAGCTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCAGAATACATTCAAGCTGGCTCTGATCTGGATGTACTTATCATAGGCGGCTACTATGGTTCTGGACGACGTGGAGGAGAGGTAGCTCAATTCTTGGTGGGCTTGGCAGAGCGTTCATCCCCAAATACTCACCCTAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTATCTGATGATGAGCTTGATGCTGTAGTAACCAAATTGAAACCTTACTTTAGAAAGTGTGAATATCTTAAGAAGAGGCCACCATGTTTTTATCAAGTTACTAATCATTCAAAAGAAAGACCTGATGTGTGGATTGATAGCCCTGACAAATCAATTATTCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTATAGCCTGAGATTTCCTCGGATTGATAGGGTCAGATATGACAAGGCTTGGTATGAATGCCTTGATGTTCAATCATTTGTAGAACTAGTACATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAACAGGACAGTAAACCAAGACAAATGAAAACCTCCATAAGGGGAGGAAAGAAAAACATGTCCATTGTTCCTTCTCATTTAATTCAAACTGATGTTTCCAGCGTTAAGGGGGGTTCCTTGATATTTTCAAATATGATGTTCTACTTTGTTAATGTGCCTCCATCTCATTCTCTGGAGTCCTTGCACAAAATAATTGCTGAGAATGGGGGAACTTTCTCGATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGACAGCAAGGGTTTTAAATTTGAGGCAGCCAAGCATCATGGTGATATCATTCATTATACTTGGGTATTAGATTGCTATACACAAAAGAAGCTTGTCCCCTTAGAGCCAAAGTACTTCCTCTTCCTATCTGAACTGACAAAGAAGAAGTTACAGGAAGAAATTGATGAGTTCTCAGACTCTTACTTCTTGGATCTTGATCTTGGAGACATGAAACAGCTCTTAAGCAGTATTCATAGGTCAGAAGATCCCAGCACTGTCGATCATTACAGGAAAAAATACTCCCCAAAGGATAAGTGGTCTTTCTTTTGTGGATGCTCCATTTATTTCCACACTGCAATACCATCACCTAGGGGAGATTGGCATTTTCTATTGCAACTTGCTTTGAGGAGATTCAAGCTTGAAGTCCTCATGGGTGGTGGAAAAGTTACCTCAAATCTTTCTGATGCTTCTCATTTAGTGGCCTTGCATACACCAGAATGTTATACTGATTTTGAAGAAATACAGAGTTGTTTCAGTTCAGTAGAAAGAAAAATTCTCCGAAGCAGGAGGTTGCATATAGTTAAGTCCCAGTGGCTAGAAGATTGTATGGACAGTAGCCAAAGATTACCAGAAGACTCTTACAGCTTGAAACCCTGTGGAATAGAAGAGTCAACTACTGAAGATTGTTTTAGTGAACATGACTTCGCGTTAGAGGCTCATTTGGGTGGACATAATGTACAAGACCAAAATATAGCTTTCGCTGGCAAGGGAAGTAAACAGAGTGCAGAAGCTGCTAATGAAGACAGCATGACTTTGTTGTCCCAAGGGAAGGGAGACCAAAGAAAAAGAGGAAGACCTGCTGGCAGTGGTATCAAAAAAGTAAGAAGAGTTGGAAACCAAACTCGAAGAGGACGACCACAAATTGTGAAAAAGCGTGCTAAAATATGTAGGTATGAATCAGATGAAAGTGATTCTCATGACGAAACACTAATTAAGCAGGAGATTGACACTACAGAAGGGAATATTGACTTTTACAAGAAACATTCAGAACCACAGAAAACTGAGGAACGTGAAAATGTCCGAGTTGCTGAAACAGTGGAAAGTTCTCAACAAAATAAGGTAGAGAAGCAAGAGGACTTGACGTTGAAGGACAGCGAACATGAAAGAATGTTGGTTCCCGAAAATGAAATGAGTGATAGGCACAATGACCAAAACAATGAGGTTGATCCCGTGCAGGCCATGTTGTTTGACATGATTCCTAGCCTTGCCACCCAAAATGTTGAGCAACCTATGAATCGTAGTGTTGAAGAGAAGCTACCGGAAATATCCAATGCAGAAGCAGAGCCTACTATTACAAAGAAAAAGAAAGTTAGCTACAAGGATGTTGCTAGCGAGCTTCTCAAGGATTGGTAG 3492 0.4204 MTEQTKFSILCSLFTWTQRTKSPAKKRAKFRKFLDSFCTDHNYFAAIRLLLPNLDRERGSYGLKESVLATSLIDALGMSRDSPDAIRLINWRKGGASSGASAGNFALVATEVLQRRQGMASGGLTIKELNELLDRLSSSENRAEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIIQNVIVDRCILDGEMLVWDKSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHAILCKVVRPMKGRLEILVPSGGINSRCSSGEPCWSFIAHNVDEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERSSPNTHPKRFISFCRVGTGLSDDELDAVVTKLKPYFRKCEYLKKRPPCFYQVTNHSKERPDVWIDSPDKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWYECLDVQSFVELVHSSNGTTQRDTEYGSKQDSKPRQMKTSIRGGKKNMSIVPSHLIQTDVSSVKGGSLIFSNMMFYFVNVPPSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKHHGDIIHYTWVLDCYTQKKLVPLEPKYFLFLSELTKKKLQEEIDEFSDSYFLDLDLGDMKQLLSSIHRSEDPSTVDHYRKKYSPKDKWSFFCGCSIYFHTAIPSPRGDWHFLLQLALRRFKLEVLMGGGKVTSNLSDASHLVALHTPECYTDFEEIQSCFSSVERKILRSRRLHIVKSQWLEDCMDSSQRLPEDSYSLKPCGIEESTTEDCFSEHDFALEAHLGGHNVQDQNIAFAGKGSKQSAEAANEDSMTLLSQGKGDQRKRGRPAGSGIKKVRRVGNQTRRGRPQIVKKRAKICRYESDESDSHDETLIKQEIDTTEGNIDFYKKHSEPQKTEERENVRVAETVESSQQNKVEKQEDLTLKDSEHERMLVPENEMSDRHNDQNNEVDPVQAMLFDMIPSLATQNVEQPMNRSVEEKLPEISNAEAEPTITKKKKVSYKDVASELLKDW* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2329 1163 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Apr1g2329 1163 Gene3D BRCT domain 665 779 IPR036420 -
Apr1g2329 1163 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Apr1g2329 1163 Gene3D - 444 605 IPR012340 -
Apr1g2329 1163 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Apr1g2329 1163 SUPERFAMILY BRCT domain 788 911 IPR036420 -
Apr1g2329 1163 MobiDBLite consensus disorder prediction 1042 1098 - -
Apr1g2329 1163 MobiDBLite consensus disorder prediction 605 627 - -
Apr1g2329 1163 Pfam BRCT domain, a BRCA1 C-terminus domain 653 737 IPR001357 -
Apr1g2329 1163 ProSiteProfiles BRCT domain profile. 839 909 IPR001357 -
Apr1g2329 1163 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Apr1g2329 1163 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Apr1g2329 1163 SUPERFAMILY BRCT domain 655 740 IPR036420 -
Apr1g2329 1163 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Apr1g2329 1163 SMART BRCT_7 653 729 IPR001357 -
Apr1g2329 1163 SMART BRCT_7 799 899 IPR001357 -
Apr1g2329 1163 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Apr1g2329 1163 MobiDBLite consensus disorder prediction 1132 1146 - -
Apr1g2329 1163 Gene3D BRCT domain 797 909 IPR036420 -
Apr1g2329 1163 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Apr1g2329 1163 MobiDBLite consensus disorder prediction 1042 1056 - -
Apr1g2329 1163 MobiDBLite consensus disorder prediction 948 983 - -
Apr1g2329 1163 Coils Coil 126 146 - -
Apr1g2329 1163 PANTHER DNA LIGASE 4 2 910 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Apr1g2329 1163 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Apr1g2329 1163 CDD OBF_DNA_ligase_IV 448 592 - -
Apr1g2329 1163 MobiDBLite consensus disorder prediction 1117 1146 - -
Apr1g2329 1163 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 61 598 IPR000977 GO:0003910|GO:0005524|GO:0071897
Apr1g2329 1163 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Apr1g2329 1163 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Apr1g2329 1163 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Apr1g2329 1163 MobiDBLite consensus disorder prediction 1064 1098 - -
Apr1g2329 1163 MobiDBLite consensus disorder prediction 948 969 - -
Apr1g2329 1163 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Apr1g2329 1163 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2329 214 601 Core DNA Replication Machinery Family AT1G08130 27.723 7.94e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2329 K10777 - gmx:100816002 1982.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2329 1 32875282 32901664 Apr1g2329 1 32875282 32901664 ECH