Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2327 ATGAAGGATACTGAGAATTTAAATAACAAACGATCTAGAAAATCCAGTCAATCAAAGGAACAGACTAAGTCCAAGCTGGTTTCATCAAAATTCAAAACAAGAAGCACAAAATGCCGAGGGAAGAAACACAAAGTGAAATCAAAATCTCATAAACTCAGAGTTGGTACAAACACATCAAGGAGGACAGTTTCTGATTCTTCCATCAAGGCACCGATAGAGGATTCCTCAAATAAAAATGTTATTATTAGAAAAAATCTGCATAAAACTGATGGGAAATCTTCACAGATGCTGTCTTCAGCAAAGCTACAAGGAGAAAAAGTTTCTCATAGTTCTAGGAAACATGGGATAGATGTTGATGAGAAGGCAAAGATTAAAAAACGTAAGAGAAGGAGAAAGAAGAAAAGACGAAGGGATAAAGTGGATCTTGATGATGCTTCACGCTTGCTAAGGAGAACAAGATACCTCTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGCCGAGAGAAGATTAGACCAGAAAAGGAGCTATTAAGAGCAAAAAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGCCATACACCAGTTGGATTCTCTTAGTTCTGTGGGTAGCATTGAGGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTTTGTGATGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTTAATCCTCCTTTGGATACCGAAAATATTCCTCCTGGTGACCAAGGTTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCATTGGACAGTACTTGGCAGGATGTATTTAAGGAAGAGGCTTCTATGCCTGATGGTGATATTGCATTACTGAATCCAGTAGAAGAATGGCCATCAGATGATCCAGAAGATGATGATTATAATCCAGAGAGGAAAGAAGACAGCCACAGCATCAACATGGAAGGAGATGATGAAAATGCATCCGATGATTTAAGCAGTTCTTCTAGTCCGTGGTCTTTGAATGGCGAAAGTTCTCCAGTAGATGATAGTGTCAACCATGAATATTATTCTGTTAATAGCTGCTTATATTCTGATAAGTTAGGGGAAATAGCATTTGGCCGTAGGCAGCGTAGAGCTGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAGGATGCTCTACCAAGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCAAAGAGAAAAGGAGTCTGATGCTGTCAATACTCTTATTACACTGCATGAAAGTGAGAATAAATATCCCAATAATGAGAACAATGATAAAATAATAGATGGTTCTTCAGGCATACAAGTAAGAAGGCCTTGTTTCAGGATTCCACTTGATGCAGTTGAGAAACTCCGCCAAGTTTTTGCAGAGAATGAACTTCCTCCAAGATCTGTGAAGGAAGGTCTTTCAAAAGAGTTGGGACTTGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTGGCACTTAAAACCAGAAGGTTTCAAGCAGAAGGAGAACAGCTTCAAAGTTTCACTTCTAAGATCTCAAAGGATTCTGTATCTCAAAACATGGAGAAAGACGAGCTTTTGAAATCAAAGGCCTCCAAAATTACCGTGACTCATTCCCAGAAGAATGGTGAAAATGTCACTTGTAAAGAGAAAATAAAATTATCTAGTCCCTTAAAGAAAAGGCAACCAAAACTATATCCACCAGTGACAAGACAAAATGGCAATAAGGACACTGTGGAGATCAGTGATGATATTAGCTTGAAGAAACTGTTGAAAAAAAGAAAAAAGAGGGTAAATTTTACATTTGAAGGGGACTCTCAGGCAGCTGAGTTGGAATTTGAAAGACTCAGTAAAGTGAAGATTAAACTAGATAGCATGAAGCAAAAATTAAATGAACTTCAAAATTTCAGAGCAAAGGACTCACATAAACTCTATTTGAACGAACCGTGTGTTATATATGTCCCCACAGCTGAGTTAAGGGAAAAGGTTGAATAA 2154 0.3779 MKDTENLNNKRSRKSSQSKEQTKSKLVSSKFKTRSTKCRGKKHKVKSKSHKLRVGTNTSRRTVSDSSIKAPIEDSSNKNVIIRKNLHKTDGKSSQMLSSAKLQGEKVSHSSRKHGIDVDEKAKIKKRKRRRKKKRRRDKVDLDDASRLLRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDAIHQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQDVFKEEASMPDGDIALLNPVEEWPSDDPEDDDYNPERKEDSHSINMEGDDENASDDLSSSSSPWSLNGESSPVDDSVNHEYYSVNSCLYSDKLGEIAFGRRQRRAVDYKKLYDEMFGKDALPSEQVSEDEDWGPGKRKQREKESDAVNTLITLHESENKYPNNENNDKIIDGSSGIQVRRPCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYLALKTRRFQAEGEQLQSFTSKISKDSVSQNMEKDELLKSKASKITVTHSQKNGENVTCKEKIKLSSPLKKRQPKLYPPVTRQNGNKDTVEISDDISLKKLLKKRKKRVNFTFEGDSQAAELEFERLSKVKIKLDSMKQKLNELQNFRAKDSHKLYLNEPCVIYVPTAELREKVE* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2327 717 Pfam PHD-finger 235 290 IPR019787 -
Apr1g2327 717 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Apr1g2327 717 SMART HOX_1 490 552 IPR001356 GO:0003677
Apr1g2327 717 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
Apr1g2327 717 Pfam Homeodomain 501 543 IPR001356 GO:0003677
Apr1g2327 717 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Apr1g2327 717 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Apr1g2327 717 CDD PHD_PRHA_like 235 287 IPR045876 -
Apr1g2327 717 MobiDBLite consensus disorder prediction 367 387 - -
Apr1g2327 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Apr1g2327 717 MobiDBLite consensus disorder prediction 1 71 - -
Apr1g2327 717 PANTHER POLYCOMB PROTEIN PCL 7 693 - -
Apr1g2327 717 MobiDBLite consensus disorder prediction 106 123 - -
Apr1g2327 717 Gene3D - 490 557 - -
Apr1g2327 717 MobiDBLite consensus disorder prediction 1 20 - -
Apr1g2327 717 Coils Coil 669 689 - -
Apr1g2327 717 MobiDBLite consensus disorder prediction 86 140 - -
Apr1g2327 717 MobiDBLite consensus disorder prediction 347 361 - -
Apr1g2327 717 CDD homeodomain 491 543 IPR001356 GO:0003677
Apr1g2327 717 MobiDBLite consensus disorder prediction 30 55 - -
Apr1g2327 717 MobiDBLite consensus disorder prediction 330 387 - -
Apr1g2327 717 MobiDBLite consensus disorder prediction 91 105 - -
Apr1g2327 717 MobiDBLite consensus disorder prediction 56 71 - -
Apr1g2327 717 SUPERFAMILY Homeodomain-like 491 552 IPR009057 -
Apr1g2327 717 MobiDBLite consensus disorder prediction 610 629 - -
Apr1g2327 717 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 7 693 - -
Apr1g2327 717 SMART PHD_3 235 288 IPR001965 -
Apr1g2327 717 MobiDBLite consensus disorder prediction 434 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2327 Apr-Chr1 32859662 32865515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2327 134 553 Homeobox Transcription Factor Family AT4G29940 57.309 3.84e-156 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Apr1g2327 PHD 8.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2327 - - gmx:100787118 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2327 1 32859662 32865515 Apr1g2327 1 32859662 32865515 ECH
Apr9g2555 9 32751248 32757207 Apr1g2327 1 32859662 32865515 PCT