Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2298 ATGGCTGGTGACAAGGGAAAAATCACTTTGGAAGAGATCAAGAATGAGACTGTTGATCTGGAACGTATTCCAATTGAGGAAGTGTTCGAGCAATTGAAATGTACAAGGGAAGGTTTGTCCTCAGAGGAAGGAGCCAACAGGATTCAAATATTTGGGCCCAACAAGCTAGAAGAGAAGAAGGAAAGCAAATTTCTCAAGTTTCTTGGGTTCATGTGGAATCCCCTATCATGGGTGATGGAAGCTGCAGCTATAATGGCAATTGCTCTTGCAAATGGTGAAGGGAAGCCTCCAGATTGGCAAGATTTCGTGGGTATTGTGTGCTTGTTGCTTATCAACTCCACCATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCTGCTCTCATGGCTGGTCTTGCTCCTAAAACAAAGGTTCTTAGAGATGGTAAATGGAGTGAGCAAGAAGCTGCAATTCTAGTCCCTGGAGATATCATAAGCATAAAACTAGGTGACATTATACCTGCTGATGCACGTCTTCTGGAGGGTGATCCATTGATGGTTGATCAAGCAGCTCTGACTGGAGAATCACTTCCAGTGACTAGGCATCCAGGGCAAGAGGTTTTCTCTGGCTCAACTTGCAAACAAGGCGAAATCGAAGCCGTTGTTATTGCAACCGGAGTTCACACATTCTTTGGGAAGGCAGCTCATCTGGTGGATAGTACCAACCAAGTTGGACACTTTCAGAAGGTTCTTACAGCAATTGGAAACTTCTGCATTTGTTCCATTGCTGTTGGTATGTTAGCTGAGATCATAGTCATGTACCCAATTCAGCACCGCAAGTATAGAGATGGAATTGACAACCTTTTAGTCCTTTTGATTGGAGGGATTCCCATTGCTATGCCTACTGTGTTGTCTGTCACAATGGCCATTGGTTCTCATAAGCTTTCTCAGCAAGGTGCCATCACCAAGCGTATGACTGCCATAGAAGAAATGGCTGGTATGGATGTCCTTTGTAGTGACAAGACAGGAACACTCACCCTTAACAAACTCAGTGTTGACAAGAACTTGATTGAGGTCTTTGCAAAGGGTGTGGACAAGGATCATGTCATCCTTCTTGCCGCCAGGGCTGCCAGGACTGAAAATCAGGACGCCATTGATGCTGCCATTGTTGGAATGCTTGCTGATCCTAAAGAGGCCAGGGCTGGGATAAGAGAGGTACACTTCCTACCATTCAATCCTGTTGACAAGAGAACTGCTTTGACTTATGTTGATGCACAAGGAAATTGGCACCGGTCAAGCAAAGGTGCTCCTGAGCAGATCATGACCCTGTGTAACCTCAGGGATGATGCTAAGAAGAAGGTCCATGCTATTATTGACAAGTTCGCGGAAAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCTGAGAAATCAAAAGAAAGTGCTGGTGGTCCATGGCAATTTGTTGGTTTGTTGTCATTGTTTGATCCCCCTAGGCATGACAGTGCTGAAACCATTCGCAGAGCTCTTAATCTTGGTGTAAATGTTAAGATGATTACTGGTGATCAACTTGCCATAGCTAAGGAAACAGGAAGGAGACTTGGGATGGGAACAAATATGTACCCATCTGCTTCATTGCTTGGTCAAGACAAAGACTCAAGTATTGCTGCACTTCCAATTGAAGAACTGATTGAGAAAGCAGATGGATTTGCTGGAGTTTTTCCAGAGCACAAATATGAAATTGTAAAGAAGCTGCAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAATGATGCCCCTGCATTGAAGAAGGCTGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCAAGAGGTGCTTCTGATATTGTCTTGACAGAACCTGGATTGAGTGTTATTATTAGTGCAGTTTTAACTAGCAGAGCTATTTTCCAAAGAATGAAGAACTACACGATCTATGCAGTTTCTATCACAATCCGTATAGTGTTTGGCTTTATGTTTATTGCACTTATCTGGAAATTCGACTTCTCTCCTTTCATGGTTTTGATTATTGCCATTCTAAATGATGGAACAATCATGACAATTTCAAAGGACAGGGTTAAGCCATCTCCTTTGCCTGATAGCTGGAAACTGAGAGAGATATTTGCTACTGGGGTTGTTCTTGGAGGTTACTTGGCATTGATGACTGTTATATTCTTCTGGGCAATGAAAGAAACTAGGTTCTTCCCAGATAAATTTGGAGTTAGGCCACTTCATAATAGTCCAGATGAAATGACTGCTGCTTTGTATCTACAAGTCAGTATAGTTAGCCAGGCTTTGATTTTTGTAACGCGTTCACGCAGCTGGTCTTATGTTGAACGCCCTGGATTACTGTTAATGAGTGCTTTTGTTATTGCTCAGCTGATTGCTACAATAATTGCAGTATATGCCAACTGGGGCTTTGCAAAGATCAAAGGAATTGGTTGGGGTTGGGCAGGAGTCATTTGGCTCTACAGTGTTGTCTTCTATGTTCCACTTGACTTTATGAAGTTTGCCATCCGCTACATCTTGAGTGGCAAGGCATGGCTAAATCTCCTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTATGGTAAGGAGGAGAGGGAAGCTCAATGGGCTCTTGCTCAGAGGACACTGCATGGACTTCAACCACCAGAAACTTCTATCTTCAATGAAAAGAGCAGTTATAGAGAACTTTCTGAGATTGCTGAGCAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTTCATACACTTAAGGGACATGTTGAGTCTGTGGTGAAGCTGAAAGGTCTGGACATTGATACAATTCAGCAGCATTACACTGTGTGA 2865 0.4349 MAGDKGKITLEEIKNETVDLERIPIEEVFEQLKCTREGLSSEEGANRIQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGEGKPPDWQDFVGIVCLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLMVDQAALTGESLPVTRHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKDHVILLAARAARTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYVDAQGNWHRSSKGAPEQIMTLCNLRDDAKKKVHAIIDKFAERGLRSLAVARQEVPEKSKESAGGPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDSSIAALPIEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGGYLALMTVIFFWAMKETRFFPDKFGVRPLHNSPDEMTAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMSAFVIAQLIATIIAVYANWGFAKIKGIGWGWAGVIWLYSVVFYVPLDFMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSIFNEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2298 954 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 38 810 IPR006534 GO:0008553|GO:0016021|GO:0120029
Apr1g2298 954 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Apr1g2298 954 PANTHER PLASMA MEMBRANE ATPASE 2 934 - -
Apr1g2298 954 CDD P-type_ATPase_H 38 845 IPR006534 GO:0008553|GO:0016021|GO:0120029
Apr1g2298 954 SFLD Haloacid Dehalogenase 315 643 - -
Apr1g2298 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Apr1g2298 954 Pfam E1-E2 ATPase 135 312 - -
Apr1g2298 954 PRINTS P-type cation-transporting ATPase superfamily signature 183 197 - -
Apr1g2298 954 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Apr1g2298 954 PRINTS P-type cation-transporting ATPase superfamily signature 487 498 - -
Apr1g2298 954 PRINTS P-type cation-transporting ATPase superfamily signature 509 519 - -
Apr1g2298 954 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Apr1g2298 954 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Apr1g2298 954 SUPERFAMILY HAD-like 329 639 IPR036412 -
Apr1g2298 954 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2298 954 PRINTS H+-transporting ATPase (proton pump) signature 564 580 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2298 954 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2298 954 PRINTS H+-transporting ATPase (proton pump) signature 623 648 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2298 954 PRINTS H+-transporting ATPase (proton pump) signature 764 785 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2298 954 PANTHER CALCIUM-TRANSPORTING ATPASE 2 934 - -
Apr1g2298 954 Gene3D - 98 819 - -
Apr1g2298 954 SFLD p-type atpase 315 643 IPR044492 -
Apr1g2298 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 851 IPR023298 -
Apr1g2298 954 Gene3D - 330 629 IPR023214 -
Apr1g2298 954 Pfam Cation transporter/ATPase, N-terminus 23 85 IPR004014 -
Apr1g2298 954 Gene3D - 345 492 IPR023299 GO:0000166
Apr1g2298 954 SUPERFAMILY Calcium ATPase, transduction domain A 136 233 IPR008250 -
Apr1g2298 954 Gene3D - 903 954 - -
Apr1g2298 954 Gene3D - 136 220 - -
Apr1g2298 954 Pfam haloacid dehalogenase-like hydrolase 329 606 - -
Apr1g2298 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 567 681 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2298 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 105 354 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2298 954 Coils Coil 905 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2298 Apr-Chr1 32509853 32518003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2298 9 954 Primary Pumps ATPases AT4G30190 84.490 0.0 1643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2298 K01535 - gmx:100804422 1779.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2576 9 32966470 32974060 Apr1g2298 1 32509853 32518003 PCT