Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2294 ATGGAGTGGGACAGCAATTCCGATCTCAGCGGCGACGACGATGCCGCTTCCTTCCTCCTAAACGACGACGATGACGACGTCGTTGGACCCCTCCCTTTCCCCGTCCTCCAGACGGCGCCGTGTGGCTTCATCGTCACCGACGCGCTCGAACCCGACCACCCTATCATATACGTCAACGCCGTGTTCGAGATGGTTACCGGTTACCGTGCCGAAGAAGTGCTCGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACTGTAGTTTCAGAAATTAGAAGATGCCTTGAGGAAGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTCGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTGACACCTATATTTGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACGGAGGCAAACATTGATCTTGGTCCTGTTCCGGGTTCTACAATTAAGGAATCTACTAAATCATCAGATCGGTTTCATTCTGTGCTTTCGTCATTGCATCCTCTTCCAGTGGGGGACCGTAATGTTGCTCGTGGAGTTTGTGGGATATTGCAGTTGAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGGTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTTTGTAGGCGATTGTATGAGCTAACAAAAAATGAGGACCTTTGGAGAATGGTGTGCCAGAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGTCTGGCAAGGGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTAACTGTTGGAGGTGCTGTTGAACCTTCACGCTGTAATTTTAGTGCCTGTGCAGTTGGTAATAGAGTTGTCCTTTTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAAGTGAGTTCTCCTCCCCCTGGCCGGTGGGGCCACACTCTTTCTTGTGTTAATGGTTCACGTTTAGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTTTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCTTGGCATAGCTCGTGTACTCTTGATGGTACCAAGTTGATAGTCTCTGGGGGCTGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTCCTCCTTGATTTGTCGATGGAGAAACCTGTGTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCACGGCTGGGTCACACACTATCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCCTGCGTTTCCGCTCCAGCGATGTATTCACAATGGATTTAAGTGAGGAGGAGCCTTGCTGGAGATGTGTAACAGGGAGTGGAATGCCCGGTGCTGGAAATCCTGGAGGCATAGCCCCTCCTCCTAGACTTGATCATGTGGCTGTTAGCCTTCCAGGTGGGAGAATTCTAATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTAGATCCAACTGATGAGAAGCCTACATGGAGAATCCTCAATGTACCTGGGCACCCTCCGAGATTTGCTTGGGGACATAGTACGTGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACAGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCCTTGGCAAGTTCAGTCATCTAG 1809 0.4892 MEWDSNSDLSGDDDAASFLLNDDDDDVVGPLPFPVLQTAPCGFIVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIFGDDEITHVIGIQFFTEANIDLGPVPGSTIKESTKSSDRFHSVLSSLHPLPVGDRNVARGVCGILQLSDEVLSLKILARLTPRDIASVGSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGHPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2294 602 Gene3D PAS domain 33 150 - -
Apr1g2294 602 ProSiteProfiles PAS repeat profile. 35 100 IPR000014 -
Apr1g2294 602 CDD PAS 39 131 IPR000014 -
Apr1g2294 602 SUPERFAMILY Galactose oxidase, central domain 273 587 IPR011043 -
Apr1g2294 602 Pfam Galactose oxidase, central domain 286 336 - -
Apr1g2294 602 Gene3D - 184 234 - -
Apr1g2294 602 SUPERFAMILY F-box domain 180 251 IPR036047 GO:0005515
Apr1g2294 602 Pfam F-box-like 198 236 IPR001810 GO:0005515
Apr1g2294 602 Pfam PAS domain 40 139 IPR000014 -
Apr1g2294 602 Pfam Galactose oxidase, central domain 348 397 - -
Apr1g2294 602 Pfam Kelch motif 443 494 IPR011498 GO:0005515
Apr1g2294 602 Pfam Kelch motif 510 557 IPR011498 GO:0005515
Apr1g2294 602 PANTHER ADAGIO PROTEIN 1-LIKE 1 601 - -
Apr1g2294 602 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 139 IPR035965 -
Apr1g2294 602 TIGRFAM sensory_box: PAS domain S-box protein 38 138 IPR000014 -
Apr1g2294 602 Gene3D - 264 488 IPR015915 GO:0005515
Apr1g2294 602 Gene3D - 489 601 IPR015915 GO:0005515
Apr1g2294 602 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2294 Apr-Chr1 32463277 32470029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2294 35 233 AGC Kinase Gene Family AT5G58140 23.111 2.94e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2294 K12115 - gmx:100802828 1159.05