Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2293 ATGACACTCACCATGGATAAATTTCTGAATGATTTGGAAAGGGAAAAGCCAGTTAGGTTCACTGATCAGCATCTAAAAATTGCAACTGATAACTACTCTTACTTGTTGGGTTCAGGAGGTTTTGGAGCTGTTTATAAGGGAATTTTTAGTGATGGAACCATTGTGGCTGTGAAGGTTCTACGTGGAAGTACTGACAAGAAAATTGAGGAGCAGTTTATGGCAGAAGCTGGTACAATTGGTAAGATACATCATTTCAATCTTGTGAGGCTCTACGGATTTTGCTTTGAAAGAAACTTTATAGCACTGGTTTATGAGTACATGGTGAATGGCTCTCTTGACAAGTATTTGTTTCATGAAAACAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCTGTTGGGACAGCTAGAGGCATTGCTTATTTGCATGAAGAGTGCCAACAAAGAATAATCCATTATGATATCAAACCAGAAAATATTCTTTTGGATAGGAATTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAATAGGGAAAATTCGCATTTAACTATGACTGGAGGAAGGGGTACTCCTGGTTATGCTGCACCTGAACTTTGGATGCCATTTCCTGTGACTCACAAGTGTGATGTTTATAGCTTTGGCATGCTTTTATTTGAAATCATAGGTAGGAGAAGAAACCTTGATATTAAGCTTCCTGAAAGCCAGGAGTGGTTTCCAATGTGGGTTTGGAAAAAATTTGATGCTGGAGAAGTTGAGGAGTTGATAATTGCATGTGGGGTAGAGGAGAAGAGTAAGGATATTGTGGAGAGAATGGTTAATTTGGCTCTATCTTGTGTTCAATATAGGCCAGAATTAAGGCCTATAATGAGTGATGTGGTGAAAATGTTGGAAGGTTCAGTGGAAATTCCGAAACCTTCAAATCCATTTCAGCAATTTATGGATGGGAATTTCATTGCTGGTCCAGTTCAAGTGCCAGTGACATATAGTACAAGTACTTGTGGTTCTTCTGTTATGGCATCTGATTCTAGCATTTTGCATGCCACTTCTATTATGAGGAACCATGACATTGAATTAGCCTCCAGCCAGGGCTGA 1104 0.3913 MTLTMDKFLNDLEREKPVRFTDQHLKIATDNYSYLLGSGGFGAVYKGIFSDGTIVAVKVLRGSTDKKIEEQFMAEAGTIGKIHHFNLVRLYGFCFERNFIALVYEYMVNGSLDKYLFHENKTLGYEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPENILLDRNFNPKVADFGLAKLCNRENSHLTMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNLDIKLPESQEWFPMWVWKKFDAGEVEELIIACGVEEKSKDIVERMVNLALSCVQYRPELRPIMSDVVKMLEGSVEIPKPSNPFQQFMDGNFIAGPVQVPVTYSTSTCGSSVMASDSSILHATSIMRNHDIELASSQG* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2293 367 ProSitePatterns Protein kinases ATP-binding region signature. 36 58 IPR017441 GO:0005524
Apr1g2293 367 Gene3D Transferase(Phosphotransferase) domain 1 107 311 - -
Apr1g2293 367 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2293 367 Pfam Protein tyrosine and serine/threonine kinase 35 300 IPR001245 GO:0004672|GO:0006468
Apr1g2293 367 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 363 IPR045874 GO:0004672
Apr1g2293 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Apr1g2293 367 Gene3D Phosphorylase Kinase; domain 1 5 106 - -
Apr1g2293 367 SMART serkin_6 30 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2293 367 SUPERFAMILY Protein kinase-like (PK-like) 14 301 IPR011009 -
Apr1g2293 367 PANTHER PUTATIVE-RELATED 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2293 Apr-Chr1 32459708 32460826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2293 19 313 Receptor kinase-like Gene Family AT5G38280 42.574 9.52e-78 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Apr1g2293 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2293 - - gmx:100803355 608.216