Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2292 ATGTCAACAAGCACTAGTGATGGAACTGAATTTGGGGCGATTGGGGCTGTCATCTTACTTGTTGTGGTTGGGGTGAAGGTTGGTATTTTGATTTGTGTGTGCCGAAAAAGAAATCAGAATGATAGTAAAGTGGGTGTAGACTCACAATTTTTGACACTCACTATGGATAAATTTCTGAATGATATGGAAAGGGAGAAGCCAATCAGGTTCACTGGTCAGCAACTAAGGATTGCAACTGATAACTACTCTAACTTGTTGGGTTCAGGAGGTTTTGGAGCTGTTTATAAAGGGGTTTTTAATAATGGAACAATGGTAGCAGTGAAGGTTCTACGTGGGAGTTCAGACAAGAAAATTGAGGAGCAATTTATGGCAGAAGTTGGTACAATTGGAAGAATTCATCATTTTAATTTGGTTAGGCTCTATGGATTTTGCTTTGAAAGAAACTTGATAGCACTGGTTTATGAGTACATGGGAAACGGCTCTCTTGATAGGTATTTGTTTCATGAAAACAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCAATTGGAACAGCTAGAGGGATTGCTTATTTGCATGAAGAGTGTCAACATAGAATAATCCACTATGATATAAAACCAGAAAACATTCTCTTGGATAGGAACTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGTAATAGGAACAATACTCATATAACTATGACTGGAGGAAGGGGTACTCCTGGTTATGCTGCACCTGAGCTTTGGATGCCATTTCCTATAACTCACAAGTGTGATGTTTATAGCTTTGGAATGTTGTTATTTGAAATCATAGGAAGGAGAAGAAACCTTGACATTAAACTTTCTGAAAGCCAGGAATGGTTTCCAATATGGGTTTGGAAAAAGTTTGATGCTGGACATCTTGGGGAGTTAATAATAGTTTGTGGGATAGAGGAGAAAAAAAAGGAGATTGCTGAAAGAATGGTCAAGATAGCTTTGTGGTGTGTTCAGTATAGGCCAGAATTAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGTGGAAATTCCTGAACCTATGAACCCATTTCAGCACTTGATGGATGGGGTTGTTGCTCATCCAATCCCAGTTTCAGAGACTTATACAGCAAGTATTTCTCCTGCTTCTTCTGTTATGGTAAATGATTCCAGCTTTGTATGTGCTACTCCTGTTATGATAAAGTATGAGATTGAATTGGCCGCTAGCAGTGTGTGA 1254 0.3876 MSTSTSDGTEFGAIGAVILLVVVGVKVGILICVCRKRNQNDSKVGVDSQFLTLTMDKFLNDMEREKPIRFTGQQLRIATDNYSNLLGSGGFGAVYKGVFNNGTMVAVKVLRGSSDKKIEEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFHENKTLGYEKLHEIAIGTARGIAYLHEECQHRIIHYDIKPENILLDRNFNPKVADFGLAKLCNRNNTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRRNLDIKLSESQEWFPIWVWKKFDAGHLGELIIVCGIEEKKKEIAERMVKIALWCVQYRPELRPIMSVVVKMLEGSVEIPEPMNPFQHLMDGVVAHPIPVSETYTASISPASSVMVNDSSFVCATPVMIKYEIELAASSV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2292 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Apr1g2292 417 Pfam Protein kinase domain 84 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2292 417 Gene3D Phosphorylase Kinase; domain 1 54 156 - -
Apr1g2292 417 PANTHER PUTATIVE-RELATED 15 416 - -
Apr1g2292 417 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 416 IPR045874 GO:0004672
Apr1g2292 417 Gene3D Transferase(Phosphotransferase) domain 1 157 359 - -
Apr1g2292 417 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Apr1g2292 417 SUPERFAMILY Protein kinase-like (PK-like) 63 351 IPR011009 -
Apr1g2292 417 SMART serkin_6 80 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2292 417 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2292 Apr-Chr1 32455843 32457478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2292 69 388 Receptor kinase-like Gene Family AT5G38280 40.244 4.65e-79 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Apr1g2292 Pkinase 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2292 - - gmx:100816921 694.501