Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2291 ATGAGTTTTCGCTTTTCTCCTCCAGATTTCTACTCTTCATCAAACGATTTTGACACTCAAGCGCAAACCACTTTTGACAATTTTAATTCCTCTGTGAAATGGGCTGTGGCAGGCTCAGTTGTTTCTGGAGTGGTGGTAATGATAGCAATTGTAGCAATAGTTTATGCCGTCATTGATTGCTTGAAGAAGACAGGAGCAGCAATTCCATCTTACACTCAACTTCCAACCATAGAAAAAACTCATAAAGCTTCAAATTCCTTTCCTTCAAGTAAAATTGAAGTTATAATACCACCAGATTCCACTGTTCAAGGTTCAAAAGTTGAGTTTGCAACTATGGAAAGGTTCTTAAGCAACATCAACAAAGAGAAACCAATTAGATTCTCACCAGAACAACTTGATGAAGTTACATGGAACTACTCAATCATATTGGGTTCTGGTGCTTTTGGAGTTGTGTACAAAGGGGAATTGTCAAATGGAGAGCATGTAGCAGTCAAAGTTATCAACAGTTTAGATATGCAAATGGAAGAGCAAATCAAAGCAGAAATTAGCACCATTGGAAGAACTTACCACGTCAATCTAGTTAGACTTTATGGCTTCTGTTTCCACCGTGACAAACGAGCCCTTGTCTATGAATATGTGGAAAATGGGTCTCTAAACAGGTACTTGTTTGGCAGCCAGAACCGCGACATCGCGTTGGAAAAGCTTCATGAGATTGCAATTGGAACGGCTAAAGGAATTGCTTATTTACATGAGGAATGTCAACAGAGAATAATTCATTATGACATTAAGCCAGAGAATGTTCTTCTTGACATGAAAATGGAACCAAAGGTAGCAGATTTTGGCCTGGCAAAGCTTAGCAACAGAGAAAGTAATGTTGCAGTCAATACACACTTTAGAGGAACAAGAGGATATGCTGCACCAGAAATGTGGAAGCCTCATCCAGTGACTAAGAAATGTGATGTGTATAGTTTTGGTATTCTTCTCTTTGAAATTGTAGGGAGGAGAAGGCATTTTGATTGTAACTACAGTGAATCACAGCAATGGTTTCCAAAATGGACATGGGATATGTTTGAGAATAATGAGTTATCTGTAATGCTTTCACTTTGTGGAATTGAAGAGAGAGACAAAGAGAAGGCTGAGAGAATGTTAAAGGTAGCTCTATGGTGTGTTCAGTATTTGCCAGATGATAGACCTCTTATGAGTACTGTGGTGAAGATGTTGGAGGGTGAAATTGAAATTTCTCCACCTCCACCTCCCTTCCAAAATCTGGTGTCCAATAAACCAAACTTGACTCCAGAAGGAAGCACTGGAGGTTCAGATACTACTACGTCATGGCAGACAGAATCTTCCGGAGTATCTGGCTCCAAAACCAATAACAATGCATTTCAGATTGAAAAGCCTACTTAA 1407 0.3937 MSFRFSPPDFYSSSNDFDTQAQTTFDNFNSSVKWAVAGSVVSGVVVMIAIVAIVYAVIDCLKKTGAAIPSYTQLPTIEKTHKASNSFPSSKIEVIIPPDSTVQGSKVEFATMERFLSNINKEKPIRFSPEQLDEVTWNYSIILGSGAFGVVYKGELSNGEHVAVKVINSLDMQMEEQIKAEISTIGRTYHVNLVRLYGFCFHRDKRALVYEYVENGSLNRYLFGSQNRDIALEKLHEIAIGTAKGIAYLHEECQQRIIHYDIKPENVLLDMKMEPKVADFGLAKLSNRESNVAVNTHFRGTRGYAAPEMWKPHPVTKKCDVYSFGILLFEIVGRRRHFDCNYSESQQWFPKWTWDMFENNELSVMLSLCGIEERDKEKAERMLKVALWCVQYLPDDRPLMSTVVKMLEGEIEISPPPPPFQNLVSNKPNLTPEGSTGGSDTTTSWQTESSGVSGSKTNNNAFQIEKPT* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2291 468 Pfam Protein kinase domain 142 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2291 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Apr1g2291 468 Gene3D Phosphorylase Kinase; domain 1 101 212 - -
Apr1g2291 468 MobiDBLite consensus disorder prediction 424 468 - -
Apr1g2291 468 PANTHER PUTATIVE-RELATED 108 426 - -
Apr1g2291 468 MobiDBLite consensus disorder prediction 415 468 - -
Apr1g2291 468 SMART serkin_6 137 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2291 468 Gene3D Transferase(Phosphotransferase) domain 1 213 414 - -
Apr1g2291 468 ProSiteProfiles Protein kinase domain profile. 137 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2291 468 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Apr1g2291 468 SUPERFAMILY Protein kinase-like (PK-like) 124 408 IPR011009 -
Apr1g2291 468 PANTHER RUST RESISTANCE KINASE LR10-RELATED 108 426 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2291 Apr-Chr1 32444656 32447048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2291 126 443 Receptor kinase-like Gene Family AT5G38280 38.462 1.45e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Apr1g2291 Pkinase 4.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2291 - - gmx:100820269 692.575