Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2290 ATGGAAGATAACTTGAAGAGAAGCAACTTTGAAGTGTTGGGAATGTGCTGTGCCACAGAAGCGGCACTGGTTGAAAGAATTCTGAAGCCTCTGCATGGAGTCAAAGATATCTCAGTGATAGTCCCTACCCGAACAGTCACTGTGGTCCATGATATTCTCTTGATTTCTCAGTCACAAATAGCTGATGCACTGAATGCTGCAAGGCTTGAAGCCAGTTTAAGTCTACAGGGAGAGACTGATAATGACAAGAAACGGCCAGATTTACCAACAATGGCATGTGGATTTTTATTGGCACTTTCTTTCTTGAAGTATATATATCACCCTTTGGGATGGTTGGCACTTGGTTCTGTTGTCATTGGCTTCCCTAAGGTTCTATTCAGGGCTATAGCCTCCATTAAGGCTCTCACTCTTAATATCAACATTCTTGTTCTATTAGCAGTGTGTGGCACTGCTGCTTTACAAGATTTTTGGGAGGCAGGAGTCATCATATTCCTGTTCTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAGTGGTTGCGATGTCCTCATTAACGAACATGGCTCCGCAAAAGGCCGTTGTTGCTGAAACTGGGGAGCGTGTTGATGTCAATGATGTAAAGATTAATACCATCCTTGTGGTTAAGGCTGGCGATGATATTCCTCTTGATGGAGTTGTGGTGGAAGGAAAGTGTGAAGTTGACGAAAAGATGTTGACAGGAGAATCATTCCCTGTAACCAAAGAGTTAGATTCATTAGTCTGGGCTGGAACTATTAATCTGAACGGATATATAAGTGTAAAAACTACTGTGTTGGCAAAAGACACAATGGTGGCAAGAATGTCAAAGCTTGTTGAAGAGGCTTCTAGCAGAAAATCTCGAACACAAAGATTCATAGACAATTTTGCCAGGTACTATATTCCTGCTGTTGTCTTGATTTCAGCAAGCATTGCTGTGGTTCCGGCTGCATTAAGAGTTCCTGATATTACGCCTTGGTTTCATCTGGCCATTGTGGTTTTATTGAGTGCATGCCCTTGTGCTCTCATCCTCTCCACACCTGTTGCAATCTTTTGTGCTCTTACAAAAGCTGCAATCAGTGGATTACTATTTAAAGGTGGAGATTATATTGAAACACTTTCTGGAATTAAGACAGTGGCTATTGATAAAACGGGCACTATAACAAGAGGAGAGTTCACTGTGACAGATTTTTCTGTTGTACAGGACATAAGCATTGAAACTTTATTGTACTGGGTTTCAAGTGTTGAGAGTAAATCAAGTCATCCGATGGCAGCTGCACTAGTGGAATATGGAATGTTGCACTCTGTCAAGGCAATGCCTGAAAATGTGGAGAATTTTCAAAATTTTCCGGGGGAAGGTGTTGTTGGTACAATTGATGGGATAGATATTTATATAGGAAATAGGAGAATTGGTGCTAGAGCTGGTTCTGAAAGAGTTGATTGTGACATGCAATTTCAAAGCCACGAAATTTCTACCCCGAAACAATGCTGTGGACCAACCCTTGTTGGAGTCTTCAACTTATCTGATACATGCAGATCAGGTGTTTTGGAGGCAATAGAAGAGCTAAAGTTGTTAGGTGTGAGGTCAGTCATGCTGACAGGAGATAGCACTCAGGCTGCTAAGCATGTTGAGAGTCAATTGAACCATGCTCTAGACATTGTTCATGCAGAACTTCTACCTGCGGAAAAGGCCATGATCATTGATAATTTCAAGAAAGATGGGATAACAGCAATGATTGGAGATGGCGTGAATGATGCTCCTGCATTAGCTACAGCTGACATTGGCATCTCAATGGGAATATCTGGCTCAGCTCTAGCAAATGAAACAGGCAATGCAATTCTCATGTCAAATGACATGAGAAAAATACCTGAAGCTATTCGGCTAGCAAGAAAAACTATGAGAAAGCTCATTGAGAATGTCATTATTTCAATTGGCTTCAAGAGTGCCATTCTGGCATTGGCAATCTCAGGACACCCAATAGTTTGGCTTGCAGTGTTGACTGATGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTACTTCTAGAAGAGAAACCAAAACATGAAAGAGAATCTACTAGCTCTAAATATGGCACCTTCTTGGAAGATAAGACCATAACTTTACTTGACAAGAACTATAATAGTAATGAGAACCAAGTGCTTCTTACTAAAGAAAAGTGTGGTAAAGAGTGCTGTAAAAATGTCAATCATCATGTGGCAACTGTTGAAGTTCATATAGTGAAATCTTGCAATGGTTGCTGTCTAGGAAAAGTCAAAATGTGTGAGGATTCTTCATACAGAACAAATAATAGGTGTGCTAGTTGGCAAGTGCACTACAAGACTAAAAAATGTGGCACTGGTTCTGTTGTGACACAAGATGAGAAAATTGCTGCTACCTTGGAGTCTGTTGGCTATAAAATAGAGTCTATGGATGATGTTTCAGAGTTGTCTGAGACAAGTGGGATTCCAATGTGCTGCAAGAATCGATGCTGTAATGATAGAGTAAACAATATCAGTAGCCTTAACAAGCCAGAAATTATTATTGAGTGA 2577 0.4078 MEDNLKRSNFEVLGMCCATEAALVERILKPLHGVKDISVIVPTRTVTVVHDILLISQSQIADALNAARLEASLSLQGETDNDKKRPDLPTMACGFLLALSFLKYIYHPLGWLALGSVVIGFPKVLFRAIASIKALTLNINILVLLAVCGTAALQDFWEAGVIIFLFSIAQWLETRATHKAVVAMSSLTNMAPQKAVVAETGERVDVNDVKINTILVVKAGDDIPLDGVVVEGKCEVDEKMLTGESFPVTKELDSLVWAGTINLNGYISVKTTVLAKDTMVARMSKLVEEASSRKSRTQRFIDNFARYYIPAVVLISASIAVVPAALRVPDITPWFHLAIVVLLSACPCALILSTPVAIFCALTKAAISGLLFKGGDYIETLSGIKTVAIDKTGTITRGEFTVTDFSVVQDISIETLLYWVSSVESKSSHPMAAALVEYGMLHSVKAMPENVENFQNFPGEGVVGTIDGIDIYIGNRRIGARAGSERVDCDMQFQSHEISTPKQCCGPTLVGVFNLSDTCRSGVLEAIEELKLLGVRSVMLTGDSTQAAKHVESQLNHALDIVHAELLPAEKAMIIDNFKKDGITAMIGDGVNDAPALATADIGISMGISGSALANETGNAILMSNDMRKIPEAIRLARKTMRKLIENVIISIGFKSAILALAISGHPIVWLAVLTDVGTCLLVILNSMLLLEEKPKHERESTSSKYGTFLEDKTITLLDKNYNSNENQVLLTKEKCGKECCKNVNHHVATVEVHIVKSCNGCCLGKVKMCEDSSYRTNNRCASWQVHYKTKKCGTGSVVTQDEKIAATLESVGYKIESMDDVSELSETSGIPMCCKNRCCNDRVNNISSLNKPEIIIE* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2290 858 Gene3D - 177 291 - -
Apr1g2290 858 SUPERFAMILY HAD-like 386 688 IPR036412 -
Apr1g2290 858 ProSitePatterns Hypothetical cof family signature 2. 587 609 - -
Apr1g2290 858 ProSitePatterns E1-E2 ATPases phosphorylation site. 390 396 IPR018303 -
Apr1g2290 858 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Apr1g2290 858 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Apr1g2290 858 PRINTS P-type cation-transporting ATPase superfamily signature 533 543 - -
Apr1g2290 858 PRINTS P-type cation-transporting ATPase superfamily signature 587 606 - -
Apr1g2290 858 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Apr1g2290 858 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 4 766 - -
Apr1g2290 858 Gene3D - 399 519 IPR023299 GO:0000166
Apr1g2290 858 SFLD p-type atpase 371 640 IPR044492 -
Apr1g2290 858 SFLD Haloacid Dehalogenase 371 640 - -
Apr1g2290 858 Gene3D - 379 638 IPR023214 -
Apr1g2290 858 SUPERFAMILY Calcium ATPase, transduction domain A 202 287 IPR008250 -
Apr1g2290 858 CDD P-type_ATPase_HM 94 689 - -
Apr1g2290 858 Pfam E1-E2 ATPase 191 366 - -
Apr1g2290 858 ProSiteProfiles Heavy-metal-associated domain profile. 7 73 IPR006121 GO:0046872
Apr1g2290 858 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 382 IPR023298 -
Apr1g2290 858 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 4 766 - -
Apr1g2290 858 Pfam Heavy-metal-associated domain 10 54 IPR006121 GO:0046872
Apr1g2290 858 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 161 410 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2290 858 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 507 663 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2290 858 Pfam haloacid dehalogenase-like hydrolase 384 601 - -
Apr1g2290 858 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 139 690 IPR027256 GO:0006812|GO:0016021|GO:0019829
Apr1g2290 858 SUPERFAMILY HMA, heavy metal-associated domain 3 72 IPR036163 GO:0046872
Apr1g2290 858 Gene3D - 2 74 - -
Apr1g2290 858 PRINTS Cadmium-transporting ATPase signature 10 19 IPR027256 GO:0006812|GO:0016021|GO:0019829
Apr1g2290 858 PRINTS Cadmium-transporting ATPase signature 21 42 IPR027256 GO:0006812|GO:0016021|GO:0019829
Apr1g2290 858 PRINTS Cadmium-transporting ATPase signature 174 194 IPR027256 GO:0006812|GO:0016021|GO:0019829
Apr1g2290 858 PRINTS Cadmium-transporting ATPase signature 253 269 IPR027256 GO:0006812|GO:0016021|GO:0019829
Apr1g2290 858 PRINTS Cadmium-transporting ATPase signature 272 286 IPR027256 GO:0006812|GO:0016021|GO:0019829
Apr1g2290 858 CDD HMA 10 72 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2290 Apr-Chr1 32426125 32431809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2290 4 768 Primary Pumps ATPases AT4G30110 56.499 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2290 K01534 - gmx:100815324 1388.63