Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2289 ATGAAGTATATGCGGAGCAACAGCTTAAAGAGGCTCTTTTCCTTCGGAAGACGCGGTTTTGGGGAAGAGAACGATGTGGGATTGGTGGTTCCTCCTTATGTACAGAACCCTCCAAGACCCTCTTGGAAATGCTTCTCTTATGAAGAGTTATTTGATGCCACCAATGGCTTTAGCTCAGGAAATTTGATTGGGAAAGGAGGATATGCAGAGGTTTACAAGGGAAGGTTGAATGGTGGTGAAGAAATTGCAGTGAAGAGGCTCACTAGAACTTCGAGGGATGAGAGAAAGGAGAAGGAGTTTCTGACTGAGATTGGAACAATTGGTCACGCGCGTCACTCCAACGTGTTGCCTCTTCTAGGATGTTGTATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACTGTTGGTTCTGTTGCTTCCCTTATTCATGACGAGAAAGTTCCTCCTTTGGATTGGAAAACAAGGTATAAGATAGCTATTGGGACTGCACGTGGCCTTCACTACTTGCATAAAGGTTGCAAGAGGAGGATAATCCACAGGGACATCAAGGCCTCAAACATTCTGTTGACGGCAGATTTTGAGCCAAAGATATCTGATTTTGGCCTAGCAAGGTGGCTTCCATCTCAGTGGACTCATCATTCTATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCTGAGTACTACATGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTTTTCTTGCTTGAAGTCATTTCTGGGAGGAAACCGGTTGATGGGTCTCACCAAAGCTTGCACAGCTTGGCTAAACAAATATTAAATAAAGGTGAGATAGAAAAGCTGGTAGATCCAAAGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGACTTGCCTTTGCTGCCTCGCTGTGCATTCGAGCATCTGCAACTTGGCGACCTACCATGAGTGAGGTATTGGAAGCAATGGAGGGGAGGGAAATGGATAAAGAGAAGTGGGTAATGCCAAAGGAAGAAGAGCAAGAAGAAGAATTTTGGGATTTTCAGGATCTGGAATACGCATATGACAGTTCCTTTTCAATTTCTCTACCTGACTCCATTGGAAGTACTTAG 1116 0.4444 MKYMRSNSLKRLFSFGRRGFGEENDVGLVVPPYVQNPPRPSWKCFSYEELFDATNGFSSGNLIGKGGYAEVYKGRLNGGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHARHSNVLPLLGCCIDNGLYLVFELSTVGSVASLIHDEKVPPLDWKTRYKIAIGTARGLHYLHKGCKRRIIHRDIKASNILLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSLAKQILNKGEIEKLVDPKLGGAYDVTQFNRLAFAASLCIRASATWRPTMSEVLEAMEGREMDKEKWVMPKEEEQEEEFWDFQDLEYAYDSSFSISLPDSIGST* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2289 371 Pfam Protein tyrosine and serine/threonine kinase 60 278 IPR001245 GO:0004672|GO:0006468
Apr1g2289 371 Gene3D Transferase(Phosphotransferase) domain 1 135 352 - -
Apr1g2289 371 SUPERFAMILY Protein kinase-like (PK-like) 42 342 IPR011009 -
Apr1g2289 371 PANTHER OS04G0654600 PROTEIN 32 352 - -
Apr1g2289 371 PANTHER OS08G0249100 PROTEIN 32 352 - -
Apr1g2289 371 CDD STKc_IRAK 63 326 - -
Apr1g2289 371 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Apr1g2289 371 ProSiteProfiles Protein kinase domain profile. 57 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2289 371 Gene3D Phosphorylase Kinase; domain 1 34 133 - -
Apr1g2289 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Apr1g2289 371 SMART serkin_6 57 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2289 Apr-Chr1 32419850 32423081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2289 43 334 Receptor kinase-like Gene Family AT1G60800 44.000 5.83e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Apr1g2289 PK_Tyr_Ser-Thr 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2289 - - gmx:100801765 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2581 9 33025125 33029482 Apr1g2289 1 32419850 32423081 PCT