Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2282 ATGCCTCGTGGGACGCTTGAAGTTATTCTCATCAGCGCAAAAGACCTTCATGACAGTGATTTTTTCAAGAAAATGGATCCTTATGTGATTCTCACTTATCGGACACAGGAGCACAGAAGCAGTGTGGCCAAAGGTGCAGGATCTAAAGCCCATTGGAATGAAAGCTTCCTTTTCACAGTTTCTGACAGTGTTTCTGAACTTAATCTGAGGCTAATGGACAAGGATTCGTTAACTAATGATGATTTCCTTGGCCAAACAAAAATTAATCTGGAAACAGTGTTTGCTGAGGGGACCATTCCAGAAACTGCTTACAACGTTGTGAAGGAGCAGGAGTATTGTGGGGAGCTTAAAGTGGCTCTCACCTTTAATTCTGAGAGAAGCAGTGAAGTGGACTATGGCAAAGACAATTTCAGCTAG 417 0.4269 MPRGTLEVILISAKDLHDSDFFKKMDPYVILTYRTQEHRSSVAKGAGSKAHWNESFLFTVSDSVSELNLRLMDKDSLTNDDFLGQTKINLETVFAEGTIPETAYNVVKEQEYCGELKVALTFNSERSSEVDYGKDNFS* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2282 138 PANTHER C2 DOMAIN-CONTAINING 1 127 - -
Apr1g2282 138 Gene3D C2 domain 2 124 IPR035892 -
Apr1g2282 138 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Apr1g2282 138 Pfam C2 domain 4 100 IPR000008 -
Apr1g2282 138 PANTHER ELICITOR-RESPONSIVE-LIKE PROTEIN 1 127 - -
Apr1g2282 138 SMART C2_3c 5 102 IPR000008 -
Apr1g2282 138 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 124 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2282 Apr-Chr1 32363925 32365620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2282 4 94 C2H2 Transcription Factor Family AT4G21160 27.473 2.50e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2282 - - gmx:100814819 222.246