Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2277 ATGGACAATTATGGGTCATCCTCTCCGTACCGATATCCAAACCCATATATGTACCCTCCCAACCCTCATCCACCATACCCACCTCCAGGTTCAGGTCCTGATCCACAACCACATGTTCCTTATCCATATCCTTACATTTCTTCACATTCATTCAACTATTCCTATCCTCCACCTCCTAGACCTTCCTCACATTCTGGCCCATTGGAGTATTCCTATCCCCCTCCTCTCCCTTTGGACTTTCCCTACCCTCCACCATCTTATACTCATTCCCCATCTTATCCTTATCCCTACCATGTTCCTCCAGGGAATCATGCTTCTCCCAGGCCTTCCCTTTCACACCATGCTAGTTTGCAACATGGATCATCTCAGTACTATTATCAACAAAATGAATCATATTCATCGCCGGAAGGCCGTCCAGATGCCCATTCACGTGCCAATAGCTTCTCTAGTGCCTACTGGCAGGGGAACATAAGCACCCCAGGTGGTGGAGTATCACAGACTAGTGATAACTCCAAGCCATCTCAGGGTTCTGCTTACCCTCCTTTGGATGATCTCATGAGCAATGTTCAGTTGTCTGATGACAAGCCAACTGCACTTGCATCACCATCTGCACCAGCAGTGCAACCACTGACGCATTCCATTTCAGTTCCAAAGTTACAACAGAAGAAGGAGGAGTTTTATGGACATTCCAATAACTCCTTCTCAGGTTGGGGGTCGTCATACCCTGCTCGGGTGGATTCATCTAAACTCTCAGACTTTTCTGGCTCATTTAATGAATCAGTGCATAGTCAGAGTTTGCAGATTGTTCCACTGCAGAATAAAGGGTCCTTGAGAGTTTTGCTCCTACATGGAAATTTAGATATTTGGGTTCATGAAGCCAAAAATCTTCCAAATATGGACATGTTTCACAAAACATTGGGGGATATGTTTGGTAGATTACCTGGTAGTGTGAGCAATAAAATTGAAGGAACTATGAATAGGAAGATTACCAGTGATCCTTATGTATCAATTTCCATATCAAATGCTGTAATTGGGAGGACTTATGTCATTAGCAACTGTGAAAATCCTGTTTGGATGCAACATTTCTATGTTCCTGTTGCACATCATGCGGCTGAAGTGCACTTTGTCGTTAAAGACAGCGATATTGTGGGTTCACAGCTCATTGGTATTGTGGCAATTCCAGTGGAACAAATATACTCAGGGGAAAGAGTTGAAGGAGCCTACCCTATCCTTAATAGTAATGGGAAGCCTTGTAAGCAAGGTGCTGTCCTGAGCCTATCCATTCAGTATATACCAATGGAGAAACTGAGCATTTATCACCAAGGAGTTGGAGCAGGCCCTGAATACATTGGGGTTCCTGCCACATATTTTCCTTTGAGAAAAGGTGGAACTGTTACTCTATATCAAGATGCTCATGTTCCAGATGGCAGCCTTCCCAATGTAATGCTTGACAATGGGATGTATTATGTTAATGGAAAGTGTTGGCATGATATCTTTGATGCCATAAGTCAAGCTCGGCGTTTGATTTATATTACTGGGTGGTCAGTGTGGCACAAAGTTAGGTTAGTCAGGGAGACTGCTGGTTATGCATCAGATTATACCCTGGGTGATCTTCTGAGGTCAAAGTCACAGGAAGGAGTAAGAGTGCTTCTACTTATTTGGGATGATCCTACATCAAGAAGCATTTTGGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGACGATTTTTCAAGCACTCTTCAGTGCATGTGCTTCTTTGTCCTCGCATTGCTGGAAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGAACAATATATACTCATCATCAGAAAACTGTTATTGTGGATGCTGATGCTGGAAGTAACAGAAGAAAAATTATAGCATTTGTTGGTGGACTTGATTTGTGTGATGGCCGATATGATACTCCTCATCATCCACTCTTTAGAACATTGCAGACAGTACATAAGGATGACTACCACAACCCTACTTTTACGGTAATTGGTAGTGTTGGTGGTTGTCCACGAGAGCCATGGCACGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTAACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCTCACGGGATTAAAAAGTTGAAGATTTCATATGATGATGCTTTGCTAAGCCTGGAGAGAATTCCGGATGTTATTGGCATCACTGATGCTTCTAGTGTTGGTGATGACAATCCTGAAGTTTGGCATGTTCAGATATTTCGTTCAATTGATTCAAATTCCGTTAAGAGGTTTCCAAAGGATCCAAAAGATGCAACTAGCAAGAATCTAGTATGTGGAAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTTAAAGCCATTCGTGCTGCACAGCATTACATTTATATAGAGAATCAATATTTCATCGGATCTTCATATAATTGGAGTCAACATAAAGACCTTGGTGCTAATAACTTAATCCCAATGGAAATTGCTCTAAAGATTGCTGAGAAGATAAAAGAAAATGAGAGATTTGCAGTGTATATTGTCATTCCAATGTGGCCAGAGGGTGTTCCAACAGGGGCTGCCACACAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACAATTTACAAGGCTTTGGTTGAGGCAGGACTTGAAGCAGCATTCTCTCCACAGGACTACTTGAACTTTTTCTGTCTCGGCAATAGAGAGCCCATAAATATGTATGATAATGTCACTGTGACCGGAACTCCTCCCCCAGCAAATAGTCCACAAGTATCTAGTCGAAATAGCCGACGCTTCATGATATATGTTCATTCAAAAGGCATGATAGTTGACGATGAATATGTGATATTGGGCTCTGCAAACATCAACCAACGATCAATGGAAGGAACAAGGGACAGTGAGATTGCAATGGGAGCCTACCAACCTCATCATACCTGGGCAAGAAAACATTCTTATCCACATGGACAAATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGAACAATTGAAGACTGCTACTTGCAACCTGAGAGCCTTCAGTGTGTGCGAAGGGTCAGAGAAATGGGTGAGATGAACTGGAAACAATTTTCAGAAAATGAAGTAACAGAAATGAGAGGGCATCTACTGAAATACCCAGTAGAAGTTGATCGAAAGGGCAAGGTTAGACCCCTTCCAGGCTATGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTTGGATCTTTTCTTGCCATGAAGGAGAATCTAACCATTTGA 3306 0.422 MDNYGSSSPYRYPNPYMYPPNPHPPYPPPGSGPDPQPHVPYPYPYISSHSFNYSYPPPPRPSSHSGPLEYSYPPPLPLDFPYPPPSYTHSPSYPYPYHVPPGNHASPRPSLSHHASLQHGSSQYYYQQNESYSSPEGRPDAHSRANSFSSAYWQGNISTPGGGVSQTSDNSKPSQGSAYPPLDDLMSNVQLSDDKPTALASPSAPAVQPLTHSISVPKLQQKKEEFYGHSNNSFSGWGSSYPARVDSSKLSDFSGSFNESVHSQSLQIVPLQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDMFGRLPGSVSNKIEGTMNRKITSDPYVSISISNAVIGRTYVISNCENPVWMQHFYVPVAHHAAEVHFVVKDSDIVGSQLIGIVAIPVEQIYSGERVEGAYPILNSNGKPCKQGAVLSLSIQYIPMEKLSIYHQGVGAGPEYIGVPATYFPLRKGGTVTLYQDAHVPDGSLPNVMLDNGMYYVNGKCWHDIFDAISQARRLIYITGWSVWHKVRLVRETAGYASDYTLGDLLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVHVLLCPRIAGKRHSWIKQKEVGTIYTHHQKTVIVDADAGSNRRKIIAFVGGLDLCDGRYDTPHHPLFRTLQTVHKDDYHNPTFTVIGSVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPHGIKKLKISYDDALLSLERIPDVIGITDASSVGDDNPEVWHVQIFRSIDSNSVKRFPKDPKDATSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAEKIKENERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREPINMYDNVTVTGTPPPANSPQVSSRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHHTWARKHSYPHGQIHGYRMSLWAEHTGTIEDCYLQPESLQCVRRVREMGEMNWKQFSENEVTEMRGHLLKYPVEVDRKGKVRPLPGYEEFPDVGGKIVGSFLAMKENLTI* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2277 1101 PANTHER PHOSPHOLIPASE D 181 1101 IPR015679 -
Apr1g2277 1101 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 282 432 IPR035892 -
Apr1g2277 1101 SMART C2_3c 285 407 IPR000008 -
Apr1g2277 1101 ProSiteProfiles C2 domain profile. 262 408 IPR000008 -
Apr1g2277 1101 PANTHER PHOSPHOLIPASE D ALPHA 1 181 1101 - -
Apr1g2277 1101 SUPERFAMILY Phospholipase D/nuclease 463 712 - -
Apr1g2277 1101 Pfam Phospholipase D C terminal 1021 1091 IPR024632 -
Apr1g2277 1101 MobiDBLite consensus disorder prediction 91 119 - -
Apr1g2277 1101 MobiDBLite consensus disorder prediction 21 75 - -
Apr1g2277 1101 Gene3D Endonuclease Chain A 756 1001 - -
Apr1g2277 1101 MobiDBLite consensus disorder prediction 54 75 - -
Apr1g2277 1101 Gene3D C2 domain 279 423 IPR035892 -
Apr1g2277 1101 SUPERFAMILY Phospholipase D/nuclease 779 1032 - -
Apr1g2277 1101 MobiDBLite consensus disorder prediction 152 189 - -
Apr1g2277 1101 Pfam C2 domain 284 410 IPR000008 -
Apr1g2277 1101 CDD C2_plant_PLD 279 431 - -
Apr1g2277 1101 MobiDBLite consensus disorder prediction 152 177 - -
Apr1g2277 1101 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 610 645 IPR001736 GO:0003824
Apr1g2277 1101 Pfam Phospholipase D Active site motif 948 974 IPR001736 GO:0003824
Apr1g2277 1101 Pfam Phospholipase D Active site motif 611 645 IPR001736 GO:0003824
Apr1g2277 1101 Gene3D Endonuclease Chain A 486 726 - -
Apr1g2277 1101 MobiDBLite consensus disorder prediction 21 42 - -
Apr1g2277 1101 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 947 974 IPR001736 GO:0003824
Apr1g2277 1101 SMART pld_4 947 974 IPR001736 GO:0003824
Apr1g2277 1101 SMART pld_4 610 645 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2277 Apr-Chr1 32331836 32339803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2277 63 1101 Phospholipase D Gene Family (Wang group) AT2G42010 70.298 0.0 1497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2277 K01115 - gmx:100801286 1885.15