Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2274 ATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCACTTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAGGCTTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATTTTTTCTCCAAGAGGCAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACAATACACAGATCAGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAACTCTTGGGAGAGGGTTTAGGATCATGCTCCTTAGAAGAACTGCAACAGATAGAAGAACAGTTGGAAAGGAGTGTAAGCAGTGTTCGTGCAAGAAAGGAAAAAACCCTACTTGCTGAAAATGCCAAGCTCTCTGAACAGTATGGTATCCCGCCACAGCCAGCAACATGGGATCAAAGAGAAAATCAACCCTATGCAGAAAGCAGCCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGACTACCCAGATCTGGTTGA 588 0.4388 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSAQTIHRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEEQLERSVSSVRARKEKTLLAENAKLSEQYGIPPQPATWDQRENQPYAESSPSSDVETELFIGLPRSG* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2274 195 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr1g2274 195 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr1g2274 195 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr1g2274 195 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Apr1g2274 195 MobiDBLite consensus disorder prediction 152 195 - -
Apr1g2274 195 MobiDBLite consensus disorder prediction 165 184 - -
Apr1g2274 195 Coils Coil 80 107 - -
Apr1g2274 195 Pfam K-box region 83 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g2274 195 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Apr1g2274 195 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr1g2274 195 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr1g2274 195 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Apr1g2274 195 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr1g2274 195 ProSiteProfiles K-box domain profile. 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g2274 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr1g2274 195 PANTHER MADS-BOX PROTEIN SOC1 1 192 - -
Apr1g2274 195 PANTHER MADS BOX PROTEIN 1 192 - -
Apr1g2274 195 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2274 Apr-Chr1 32263071 32283324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2274 1 142 MADS-box Gene Family AT2G45660 78.169 2.04e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr1g2274 K-box 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2274 - - gmx:100037477 327.791