Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2272 ATGGGTAGAGGGAAGGTTGAGCTGAAGAAGATAGAGAACAAAATAAACCGGCAAGTTACATTCTCTAAAAGAAAGAATGGTTTGGTGAAGAAAGCTCGTGAACTCTCAGTACTGTGTGATGCTGAGGTTGCTCTTATCATTTTCTCAAGTCGTGGCAAACTCACTCAATTTGCAAGTGCTGGTTCTGGCATTACCAAAACCCTTGAACGATATCAGAGGTTCTCTTTTACACATCTAGACAACAATGTTGAACGTGAAACTCAGAGCTGGTACCAAGAAGTGTCAATGCTCAAGGCAAAATACGAGTCTCTTCAAATGACACAAAGGCATTTGCTTGGGGAAGATCTTGGACCCCTGAACATAAAAGAGCTGCAAAATATTGAGAAGCAACTTGAAGGGGCTTTATCACAAGCTCGGCAGAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTTGGATAAAGGAACGCCATCTTGGAGACATAAATAAGCAACTTAGACTAAAGCTTGAAGAAGATGGATTTAATCTTAAAGCAATTGAAAGTCTGTGGAGCTCTACCTCTGTTGCTTCTGAAGATGGCAGCTTTCCCTTTCTGCATTCTCAAATCAATCCCATGGATTTCCAAGCTGAATCTTTCTTGCAAATAGGGTACTCTCAAGCTGAGCCATCTAATGTTCCAAGGAACATGGCTGATGAGACTAACTTTATCCAAGGATGGATTATTTGA 732 0.4071 MGRGKVELKKIENKINRQVTFSKRKNGLVKKARELSVLCDAEVALIIFSSRGKLTQFASAGSGITKTLERYQRFSFTHLDNNVERETQSWYQEVSMLKAKYESLQMTQRHLLGEDLGPLNIKELQNIEKQLEGALSQARQRKTQIMIEQMEELWIKERHLGDINKQLRLKLEEDGFNLKAIESLWSSTSVASEDGSFPFLHSQINPMDFQAESFLQIGYSQAEPSNVPRNMADETNFIQGWII* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2272 243 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Apr1g2272 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR 6 1 181 - -
Apr1g2272 243 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g2272 243 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Apr1g2272 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr1g2272 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr1g2272 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr1g2272 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g2272 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 - -
Apr1g2272 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr1g2272 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr1g2272 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr1g2272 243 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Apr1g2272 243 Coils Coil 121 144 - -
Apr1g2272 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2272 Apr-Chr1 32252073 32254803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2272 1 243 MADS-box Gene Family AT2G45650 59.449 3.33e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr1g2272 K-box 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2272 K09264 - gmx:100820061 350.517