Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2264 ATGAGTTTCTTGCAGGGAATCATTGATTCCTTCAATTCCATCTTCACCCCCCACAATTCTTCTTCTTCTGAAACCGATCGAATGGAAGCGTCTCCTACTCCTACTCCTACTCCTCCTCCTTCTTCTTCTTCTGTTTCGAACGAACGCGTCGCTTACAAGCTCCAAGGCTACTTTGATTTGGCGACGCAAGAGATCGCGAAGGGCGTTAGGGCAGAAGAATGGGGTTTGATCGACGACGCTCTTCTTCACTATAAGAACGCTCACACCATTCTCCTTGAAGCTAATTCTACTCCTGTTCCTTCCTTTATCACTTCCAGTGAACAACAGAAGGTGAAATCATATCGTCAAAAGATATCAAAATGGCAGGGTCAAATTTCTGAGAGATTACAGACTCTCAGTAGACGTGCAGGTAGCTCATCTGCTAATCAGAGCACCTCCAACCTTGCGCAGACTGCTGCAGTTCCAATTAAGCTATCAAATACTAGAAAAAATGTGTTACAAAAACACCCTCAAAGTACAGGTCAGGTGAATAAAGTTGCAAGCCCGAAATCTAATCAAGCATCTGGTGTAAATAATGACACCAAACTGGTTGAAATGATCAACACAGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGCTGGGCTTGAGAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAAACCTGCTAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAGACAATGCTTGCCAAAGCAGTAGCTTCAGAATCAGAAGCAACATTTTTTAACGTATCAGCGGCTTCCTTGACGTCAAAATGGGTGGGTGAAGGTGAAAAGCTAGTTCGGACACTATTCATGGTAGCTATATCCCGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGTAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCCGATGATATTGTGATTGTAATTGGTGCAACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATATGTACCTTTACCAGATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAATAGAGATCTAGAGAGGCTTGTAAAAGAGACAGAAGGATATTCTGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGTTGGGTGCTGACATTCTTACTGTTAAGGCTAATCAGGTGAGAGGACTGAGGTATGAGGATTTTAAGAAGGCAATGACTGTGATCAGACCAAGCTTAAACAAAAGTAAATGGGAAGAGCTTGAGCGCTGGAATGAGGAGTTTGGTTCTAATTGA 1458 0.4204 MSFLQGIIDSFNSIFTPHNSSSSETDRMEASPTPTPTPPPSSSSVSNERVAYKLQGYFDLATQEIAKGVRAEEWGLIDDALLHYKNAHTILLEANSTPVPSFITSSEQQKVKSYRQKISKWQGQISERLQTLSRRAGSSSANQSTSNLAQTAAVPIKLSNTRKNVLQKHPQSTGQVNKVASPKSNQASGVNNDTKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRKPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPNRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYEDFKKAMTVIRPSLNKSKWEELERWNEEFGSN* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2264 485 ProSitePatterns AAA-protein family signature. 352 371 IPR003960 GO:0005524|GO:0016887
Apr1g2264 485 SMART smart 54 131 IPR007330 -
Apr1g2264 485 PANTHER AAA DOMAIN-CONTAINING 4 485 - -
Apr1g2264 485 Gene3D - 381 463 - -
Apr1g2264 485 MobiDBLite consensus disorder prediction 15 46 - -
Apr1g2264 485 CDD MIT_spastin 54 132 - -
Apr1g2264 485 MobiDBLite consensus disorder prediction 15 31 - -
Apr1g2264 485 Pfam AAA+ lid domain 405 436 IPR041569 -
Apr1g2264 485 CDD AAA 235 380 - -
Apr1g2264 485 SMART AAA_5 246 382 IPR003593 -
Apr1g2264 485 MobiDBLite consensus disorder prediction 168 190 - -
Apr1g2264 485 PANTHER BNAC04G50250D PROTEIN 4 485 - -
Apr1g2264 485 Gene3D - 47 136 - -
Apr1g2264 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 482 IPR027417 -
Apr1g2264 485 Gene3D - 209 479 IPR027417 -
Apr1g2264 485 Pfam ATPase family associated with various cellular activities (AAA) 250 380 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2264 Apr-Chr1 32140832 32148729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2264 191 435 Calmodulin-binding Proteins AT3G56690 42.063 6.70e-48 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2264 K13254 - gmx:100780946 841.262