Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2262 ATGGCGGCTAATCTTCCTGCAACGGCGAAGTCCACCGCGACGACGTCGTCGCAGGATAAACGACACCGTTCGATCTTCGAAGTTCCGTCAAACTTCTTCGAGTCTTGTCGCCTTCTCCCTTCTCCTCTCTCATCCCTCACCGACCACCACAGCGCAGGCCTCCGAACCCTTGAATCTTCCTCAAACGACGTCGTTGTCGATGACCCTCAAAACGCTGTCGTTTCCCTGCCGAGATGGACCTGCAACACCTGCAAGGCTCAATTCGATTCCCTTCGAGACCAGCGTTCCCATTTCAAATCCGATATTCACCGATTCAACGTGAAGCTGACAATTAAGGGAAAGACTATTGTGAAGGAAGAAGATTTTGAGATGCTGACATCTGAATTTGTTAAAGATTATGATGTGTCAAGTATATCAGGTTCAGAAAGTGACGATGATAGCGATGTTGAGTCTCAAAGTCAAAATGATGTGCGTGACAAATCAAGTGAAAGTTTTAAACAAAAAATATTCATCCGTCTTCAGAGTGGGCAGAGAGTTTCTGTCTGGAAGTGCTTGATCATGAATGTGACTGAAAACGTGTTGTATGAGAATGAAAAAGCAGAGAATGAAGTGGTTGAGAGGTTGAAATCTCTGACTGTTGAGCCCAGAGATAATACCCTTTTGAGGATCGTTCTGCTTGCATCCGGTGGGCACTTTGCAGGTTGTGTTTTTGATGGTGATGCAGTTGTGGCTCACAAGACATTTCACAGATATGTTGTAAGGGCCAAGGCAGGAAAAAAACAGTCTTCTAAAGATGCTTCTGGGCGGGCTGCACATTCTGCTGGGGCTTCCCTTCGTCGTCATAATGAACTTGCATTAAAGAAGGAAGTTCATGAACTGCTTACTGCTTGGAAACCTTATTTTGATGCTTCCAATTGCATTTTTATACATGCCCCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAGATCATATTTTACAACCAATCACCAGTGTGCTATTAGAAATATTGCTTTGAGTGTTCGGAGGCCTACTTTCAGGGAAGCAAAGCGTGTATATAGCCAGTTGACCCTGGTAACTTACGAAGCTGATGATAAGGAAATTTTACAAAGCAGTGAAGGGGACTTGGAATCAATTCACATTGCTAAAATAAATGGCATTTCATCCTCTAGCAAAGGGGACATGACTGAGTTGGCTGACAAAGATAAAGCTGAAGCTTGTTCAAGTAAACAAAATGATGAATTCCCTATTTCAAGTGGAGAAAGTGATAATGAGCTATCTGGTAAATCGACTCCTTTACATCAAGCAGTACAATCTGATGACTCTCAAAAGGTTTTGGAACTCCTCGAACAGGGCTTGAATCCTTGCATCAAAGATGAAAGGGGACGGACCCCATATATGTTGGCACATGACAAAGAAGTGAGGAATACTTTCAGAAGGTTTATGGCTTCAAATCCTGACAAATGGGATTGGCATGATGCAAAAGTGCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCTAAGAGAAAAGCTAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGCTGAAGCTGCCTTACCTAAGAATGATTCCAAAATTGATGAAATAAGAATGGCACAAGCTGCAGAAAGAGAAAAGAGAGCAGCTGCGGCTGAGAGAAGAATATCTGCCCTCAAAATTCAAGCTAATAGCAGCACAACCACTGCACCTAGCATTTCAGAACCTAAAAGTGGTTTAGGCAGTGACATTTTATGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGTTACAATTACAAATACTGCAGCACAACATGCATGCATGTACACAGAGAGATCCTAGAAGATGGATGA 1920 0.4271 MAANLPATAKSTATTSSQDKRHRSIFEVPSNFFESCRLLPSPLSSLTDHHSAGLRTLESSSNDVVVDDPQNAVVSLPRWTCNTCKAQFDSLRDQRSHFKSDIHRFNVKLTIKGKTIVKEEDFEMLTSEFVKDYDVSSISGSESDDDSDVESQSQNDVRDKSSESFKQKIFIRLQSGQRVSVWKCLIMNVTENVLYENEKAENEVVERLKSLTVEPRDNTLLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRHNELALKKEVHELLTAWKPYFDASNCIFIHAPSSSRQLLYDGERSYFTTNHQCAIRNIALSVRRPTFREAKRVYSQLTLVTYEADDKEILQSSEGDLESIHIAKINGISSSSKGDMTELADKDKAEACSSKQNDEFPISSGESDNELSGKSTPLHQAVQSDDSQKVLELLEQGLNPCIKDERGRTPYMLAHDKEVRNTFRRFMASNPDKWDWHDAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQAEAALPKNDSKIDEIRMAQAAEREKRAAAAERRISALKIQANSSTTTAPSISEPKSGLGSDILCSCCNSSLAGKVPFHRYNYKYCSTTCMHVHREILEDG* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2262 639 MobiDBLite consensus disorder prediction 503 522 - -
Apr1g2262 639 Coils Coil 505 543 - -
Apr1g2262 639 MobiDBLite consensus disorder prediction 1 15 - -
Apr1g2262 639 MobiDBLite consensus disorder prediction 412 435 - -
Apr1g2262 639 Pfam Bacteroidetes VLRF1 release factor 223 362 IPR041175 -
Apr1g2262 639 MobiDBLite consensus disorder prediction 136 160 - -
Apr1g2262 639 SUPERFAMILY Ankyrin repeat 431 484 IPR036770 -
Apr1g2262 639 ProSitePatterns Zinc finger C2H2 type domain signature. 81 103 IPR013087 -
Apr1g2262 639 Gene3D - 399 491 IPR036770 -
Apr1g2262 639 ProSiteProfiles Ankyrin repeat profile. 429 461 IPR002110 GO:0005515
Apr1g2262 639 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 16 635 - -
Apr1g2262 639 MobiDBLite consensus disorder prediction 1 21 - -
Apr1g2262 639 MobiDBLite consensus disorder prediction 393 435 - -
Apr1g2262 639 Coils Coil 559 579 - -
Apr1g2262 639 MobiDBLite consensus disorder prediction 508 522 - -
Apr1g2262 639 MobiDBLite consensus disorder prediction 396 410 - -
Apr1g2262 639 Pfam Vms1-associating treble clef domain 603 634 IPR041540 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2262 20 585 C2H2 Transcription Factor Family AT1G01930 54.905 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2262 K26089 - gmx:100527709 907.901