Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2258 ATGATGGCTTCCAACCGTAATGGCGTCCAAAGAGGAAGCGCCAAGTTCGATCGCCCTCTCAAGCCTCGCCCTCGTCCCTCCTCTCCCTCGCCGGGATCCGCCATTCGCCGCCCCGCCGCCAGAACTGGCGACGCCGTGCCTGGAAGAGTTCGAGTAGCAGTGAGATTGAGACCACGAAATGCTGAAGAAATGATGGCAGATGCTGATTTTGCTGACTGTGTTGAATTACAACCAGAGCTTAAAAGACTCAAACTTCGTAGAAACAATTGGGACTCGGACACCTATGAGTTTGATGAGGTGCTTACTGAATTTGCATCACAGAAACGTGTCTATGAAGTTGTGGCTAAGCCAGTTGTGGAGAGTGTTCTTGATGGTTATAATGGCACTGTGATGGCTTATGGGCAAACTGGAACTGGGAAAACTTTTACACTTGGACGACTGGGGGAAGGAGATGTCTCTGATCGTGGTATCATGGTTCGGTCCATGGAGGATATTTTTACTGACTTATCTCCAGATACTGATTCTGTCACTGTCTCATATCTGCAGCTTTACATGGAGGCTCTCCAGGACTTGCTTAATCCAGCTAATGATAATATATCTATAGTGGATGATCCAAGGACTGGTGATGTATCTTTACCTGGGGCAACTCTTGTAGAAATCAGGGATCAACAGAGCTTTTTAGAGTTGTTAAAAGTCGGGGAAGCTAATCGAGTTGCTGCTAACACAAAATTGAATACTGAATCTTCTCGTAGTCATGCTATTCTGATGGTACATATTAAAAGGTCTGTCATGGAAAGTGAAGATATTGTATCTAATCAAAATGGTGATGCCTCTCACTTGACTAAACCTTCAAAACCACTTGTTCGAAAGAGCAAGTTGGTTGTGGTAGACTTGGCAGGTTCAGAACGTGTCCATAAGTCAGGAAGCGAGGGACACATGCTGGAGGAAGCTAAATCTATCAATCTTTCACTTAGTTCACTGGGAAAATGTATTAATGCTCTAGCAGAGAACAATGCTCATGTTCCATTTCGTGATTCAAAGCTTACTAGGATGCTTCGAGATTCTTTTGGAGGCACAGCTAGGACTTCACTGATTGTGACTATTGGCCCATCTCCTCGTCATCGTGGAGAGACTTCTAGTACCATATTGTTTGGCCAAAGGGCTATGAAAGTTGAGAATATGCTGAAAATAAAGGAGGAATTTGATTATAAAAGCTTGTCTCGAAAGCTTGAAATACAATTAGATAAGCTTATTGCAGAAAATGAAAGGCAGCAGAAAGCTTTCGAGGATGAAGTTGAAAAGATAAATTTGGAGGCACAATGTCGTATTGCTGAGGTTGAGAGGAACTTTGCAGATGCATTAGAGAAAGAGAGACTGAAATGCCAGATGGAGTACATGGAATTGGTAAAGGAGCTGGAACAGAAGTTGGTTTTGAATCAAGAAAGACACGACTACAATGGTTTTGTGGCCGATAATGGAGAGGGGCCTGCACCATCTTCTGCAGATGAAGTTGCTGAGGTTCAAATACTGCTTGAAACTGAAAGAAATAGGAGAAAGGCAGCTGAAGAAGAGGTAGAACATCTAAAACGGCAGCTGGGGAAACATACACAAGGAGAGGCAGGAGATTCGGAGACTGTAAAGCTTCGCAACATCCAGGAGGATGAGGCTAATCAGAAAAAAGGACTTGAAGAAGAAATAATAATATTAAGGAGTCAATTATTGCAATTGAACTTTGAAGCTGACCAGATGAGAAGATGTTTAGAAAATGGAAGCACTGGGAGCACATATTCTGCCATGGATTCCTCCATGACTCAAGTTAGGCATTCCCAATTCAAAGAGACTGGGAATGGTCAGAAGTCATCCGTTGCTACACTCTTTGAGCAAGTTGGATTGCAAAAGATTTTGTCATTGCTGGAGTCAGATGATGCCAATGTACGAATTCATGCTGTGAAAGTGGTGGCCAACCTGGCAGCTGAAGAGGCTAATCAAAAGAGAATTGTTGAAGCTGGTGGTCTTACTTCTTTGCTGATGCTTCTTCGAAGATATGAGGATGAAACTGTTCGCAGAGTAGCTGCTGGGGCAATTGCCAATCTTGCTATGAATGAAGCAAATCAAGAACTAATAATGGCTGAAGGAGGAATTACTCTGCTATCGATGACTGCATCTGATGCTGAAGATCCGCAAACTCTTCGAATGGTTGCTGGGGCAATTGCTAACCTATGTGGAAATGATAAAATTTTGATGACACTGAGATCTCAGGGAGGTATCAAGGCTTTATTGGGAATTGTAAGATGTGGTCATCCTGATGTTCTTTCCCAAGTTGCACGAGGAATTGCTAACTTTGCAAAATGCGAGTCTCGAGCTTCTAATCAAGGGATAAAAAGTGGTAGGTCTTTTTTGATAGAAGATGGTGCACTTCCGTGGATAGTACAAAATGCTAATAATGAAGCTGCACCAATCAGGCGTCACATTGAGCTTGCACTCTGCCACTTGGCTCAGCATGAAGTTAATGCAAAAGACATGATTAGTGGAGGTGCTCTTTGGGAGCTTGTACGGATTTCACGGGATTGTTCTCGAGAGGACATACGGAATCTTGCTCGCCGTACTCTCAGTTCTATATCAACATTCAAATCTGAATTGCGGCGATTGCGTATAGATTATTGA 2664 0.4321 MMASNRNGVQRGSAKFDRPLKPRPRPSSPSPGSAIRRPAARTGDAVPGRVRVAVRLRPRNAEEMMADADFADCVELQPELKRLKLRRNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGEGDVSDRGIMVRSMEDIFTDLSPDTDSVTVSYLQLYMEALQDLLNPANDNISIVDDPRTGDVSLPGATLVEIRDQQSFLELLKVGEANRVAANTKLNTESSRSHAILMVHIKRSVMESEDIVSNQNGDASHLTKPSKPLVRKSKLVVVDLAGSERVHKSGSEGHMLEEAKSINLSLSSLGKCINALAENNAHVPFRDSKLTRMLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEIQLDKLIAENERQQKAFEDEVEKINLEAQCRIAEVERNFADALEKERLKCQMEYMELVKELEQKLVLNQERHDYNGFVADNGEGPAPSSADEVAEVQILLETERNRRKAAEEEVEHLKRQLGKHTQGEAGDSETVKLRNIQEDEANQKKGLEEEIIILRSQLLQLNFEADQMRRCLENGSTGSTYSAMDSSMTQVRHSQFKETGNGQKSSVATLFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVEAGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTASDAEDPQTLRMVAGAIANLCGNDKILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASNQGIKSGRSFLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRNLARRTLSSISTFKSELRRLRIDY* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2258 887 PANTHER KINESIN-RELATED 31 879 IPR027640 GO:0003777|GO:0007018
Apr1g2258 887 Pfam Armadillo/beta-catenin-like repeat 662 699 IPR000225 GO:0005515
Apr1g2258 887 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 670 713 IPR000225 GO:0005515
Apr1g2258 887 SUPERFAMILY ARM repeat 623 881 IPR016024 -
Apr1g2258 887 Gene3D - 721 884 IPR011989 -
Apr1g2258 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 426 IPR027417 -
Apr1g2258 887 SMART kinesin_4 47 399 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Apr1g2258 887 CDD KISc 49 389 - -
Apr1g2258 887 SMART arm_5 619 658 IPR000225 GO:0005515
Apr1g2258 887 SMART arm_5 833 875 IPR000225 GO:0005515
Apr1g2258 887 SMART arm_5 659 700 IPR000225 GO:0005515
Apr1g2258 887 SMART arm_5 701 742 IPR000225 GO:0005515
Apr1g2258 887 SMART arm_5 743 783 IPR000225 GO:0005515
Apr1g2258 887 Coils Coil 504 538 - -
Apr1g2258 887 MobiDBLite consensus disorder prediction 1 46 - -
Apr1g2258 887 PRINTS Kinesin heavy chain signature 125 146 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Apr1g2258 887 PRINTS Kinesin heavy chain signature 292 310 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Apr1g2258 887 PRINTS Kinesin heavy chain signature 341 362 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Apr1g2258 887 Gene3D - 614 720 IPR011989 -
Apr1g2258 887 ProSiteProfiles Kinesin motor domain profile. 49 391 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Apr1g2258 887 PANTHER KINESIN-LIKE PROTEIN 31 879 IPR033291 GO:0008017|GO:0032886|GO:0048364
Apr1g2258 887 Gene3D Kinesin motor domain 43 421 IPR036961 -
Apr1g2258 887 Pfam Kinesin motor domain 55 391 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Apr1g2258 887 ProSitePatterns Kinesin motor domain signature. 291 302 IPR019821 GO:0003777|GO:0005524|GO:0007018
Apr1g2258 887 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 629 671 IPR000225 GO:0005515
Apr1g2258 887 Coils Coil 407 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2258 Apr-Chr1 32071180 32086102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2258 34 424 Calmodulin-binding Proteins AT5G65930 34.069 6.53e-48 183