Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2254 ATGGATCTTGGAGATGGTAGAAATGGGCCCTGTGGTGCGTGCAAGTTCCTTAGGAGAAAGTGTGTGAAGGGTTGCATATTTGCACCATATTTTGACTCAGGCCAAGGCACTGCTCATTTTGCTGCGGTTCACAAAGTGTTCGGTGCCAGCAATGCCTCTAAGCTACTCACCCGTGTCCCTCCTCACAAGCGTCTTGATGCTGTTGTTACTCTTTGCTATGAGGCTCTTGCTAGGGCTACTGACCCAGTTTATGGTTCTGTTGGTCACATCTTTGCCCTTCAACAACAGGTTGTGAACTTGCAGGCAGAGTTAGCCTATGTGCATGCTCGTCTTTCCACATTGCATCGGGTGTACGTAGTTCCTCCATTTCCAGAGTCTTGTTCAAGCACCCCAAATAGCAACAATGAGTTGCAAAGTTCATACATATCAATGCATTTTGATAATCCAACATCATTAGATTTAAGCAGCTTTCTGAATCCATCCTATCAACAAGGTGATGAGCAGGAACTCCAAGCTTTGGCTCGAGATTTTGTGTCGAGGTTCTTGCCCGGAATTAATTCTCACTAA 567 0.4568 MDLGDGRNGPCGACKFLRRKCVKGCIFAPYFDSGQGTAHFAAVHKVFGASNASKLLTRVPPHKRLDAVVTLCYEALARATDPVYGSVGHIFALQQQVVNLQAELAYVHARLSTLHRVYVVPPFPESCSSTPNSNNELQSSYISMHFDNPTSLDLSSFLNPSYQQGDEQELQALARDFVSRFLPGINSH* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2254 188 Pfam Lateral organ boundaries (LOB) domain 10 108 IPR004883 -
Apr1g2254 188 PANTHER LOB DOMAIN CONTAINING PROTEIN 3 182 - -
Apr1g2254 188 ProSiteProfiles LOB domain profile. 9 111 IPR004883 -
Apr1g2254 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 3 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2254 Apr-Chr1 32019122 32022068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2254 13 186 AS2 family AT2G45410 59.659 9.01e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr1g2254 LOB 3.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2254 - - tcc:18614289 247.669