Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2252 ATGGAAGCAAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCTTCAGCTTATCATATGGCACCAAGGAGTGAAGCTCCAAACCAGGGTCCTATTCCTGAAGCAGCTGCTCCCGCTATTGGTGTGTCGCCGGTGAGTGTGGGATTGGATGGAACATCAGTTAAGAAGAAAAGGGGTAGACCAAGGAAATATGGACCAGATGGGTCTGTTACTATGGCATTGTCACCTATGCCAATCTCATCTTCAGCTCCATTTGGTAATGACTTTTCAATTTCATCCGGCAAGCGGGGAAAACCGCGAGGGATGGAGTACAAGATGCCAAAGAAAGTTGGAGTTGATCATCTGGGTGACTCTGTTGGTACAAATTTTATGCCCCATATCATTACTGTCAATACTGGTGAGGACATTACAATGAAGGTTATATCTTTTTCACAACAAGGGCCCCGAGCTATATGCATCCTATCTGCTAACGGTGTAATTTCAAATGTTACACTTCGTCAACCTGATTCTTCTGGGGGAACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGACAATCAAGGAACAAGAAGCAGGTCCGGTGGGATGAGCGTTTCTTTGTCAAGTCCTGATGGTCGTGTGGTAGGTGGTGGAGTCGCCGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTGGTAGGAAGTTTTTTACCAAGCAACCAGCAAGATCAAAAACCGAAAAAGCCCAAGTCTGATTATGCACCACCGGCTACTGTTACCCCCGCTGTTGCAGTGTCTTCTGTTCCACCCCCTACTACTAATGGCGAAAAGGAGGATATCATGGGTGGACATCTGCTGCAAAATTCAACAACCCTTAACTCAAACCTTACTCCTCCCTCGGCCTTTCGCAGAGATAACTGGGTTAACATGCACTCTATGCCAGATGCAATGAAGTCTGCTACTGATATTAACATATCTTTGCCTGATAGTTAA 1011 0.4619 MEAREGISSGVTVIGAEAPSAYHMAPRSEAPNQGPIPEAAAPAIGVSPVSVGLDGTSVKKKRGRPRKYGPDGSVTMALSPMPISSSAPFGNDFSISSGKRGKPRGMEYKMPKKVGVDHLGDSVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAASPVQVVVGSFLPSNQQDQKPKKPKSDYAPPATVTPAVAVSSVPPPTTNGEKEDIMGGHLLQNSTTLNSNLTPPSAFRRDNWVNMHSMPDAMKSATDINISLPDS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2252 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Apr1g2252 336 MobiDBLite consensus disorder prediction 51 74 - -
Apr1g2252 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 245 - -
Apr1g2252 336 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Apr1g2252 336 Gene3D - 129 258 - -
Apr1g2252 336 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 335 - -
Apr1g2252 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 335 IPR039605 GO:0003680
Apr1g2252 336 MobiDBLite consensus disorder prediction 243 263 - -
Apr1g2252 336 CDD DUF296 129 219 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2252 Apr-Chr1 32001082 32006939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2252 6 259 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 60.069 2.84e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2252 - - gmx:100777213 510.375