Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2244 ATGGCTGCTTGTGCTTTGTTCAGTGGTGGAGGCAATATTACTGAAGATAGCAATGTTAACAACAACGGTGGAAGTGCTACTAGTCCTTTGACCAGTGCATCTAACTCAAGCAACATGAGTGGTGAAGAACACAACCCCCTACATGGCATGACACAACCCCATTGTGAGAGAAAAATGGTGAGAAAGAGAATGGCTTCGGAGATGGAAGTTCATGCCACCCCACCTCACAACTCTTCCTCCACAAGTGATTATCCTAGGTTTCCTCGTAGAAACAGCACCAACATGAACTTGGGCACCTTAGAAAAAGGGGCCACCACAACAGCAACAACGTTAGCCGCAGGTACATGTTGTAATAATAATAATAATAGTAATAGCAATAACTATCATTATAATAATAGTAATAGTAATAATAATAGTAACGCTAGTAATATTTCGTCAAGAGATAACGTTGCTATTCCAAATTACCCCACTGTGACGGTCACAACCAACTACTCCACTATGATGCTACCTTCTTCCATCAATCCCTCTGGTGTTTCTCCAAACTACAGTCACCAACATCATCATTTCCAAGGTCTTATTGAGAGCCAAAGTCAAAGCCAAAGTCAAGACCACAACAACCCCGTGCCTGCAGTGTGTGGATTCTCAGGTTTGCCACTTTTTCCATCTCAAAGCCAAAGAAACAACCGAGACAACAACAACAACAACAACAACAACAACAACAATATAAGAAACAGTGGTGCTAATATTGTTGACGTGGTTGCTTCTTCTTCTTCTTCTTCTATGGAAGATACCTCAGCAGCAGCAAGTAATTGGATCGATGGTATATTGAAGGATCTTATTCACAGCTCCAACAATGTTTCAATTCCTCAACTAATCAGCAACGTGAGGGAGATTATATACCCTTGCAACCCAAACCTTGCAATGGTTCTTGAATACCGCTTGAGGCTTCTTCTCACCGAGTCCACCACACCAAACAAAAGGAGCACAGAAGGGGTTCCTCTACCTCCTTCTGTGTCCTCAGCGAAGCTTATGAACCGTGTTGATGGCATTGTTCCTAATCTACACTTCACAGATTCATCAGGTGCTGCTGTGGTTGTGAATCAACAGATGTTGTCCAATTGGGGTGTGCCTCAAATCACACACCATCATGATACCAGCAATAGCAACAACAATAACAGCAACAACAACCCTTCAGTTTCTTTGGTTACTTTACCTTCACCACCATCAACAACACCCCATTATTCACCCTCACAAGAGAAGCAGCGCCATGAGAATCACCCTCCAGAGGAAGATCTAGGAACAACCAGCAGTGCTGAGGTGGCATTCACAAGAAAGAAGAAAGAGGAGTTGAGAGAACAAAAGAAAAAAGATGAAGAGGGTTTGCATCTCCTCACTTTGCTGCTTCAGTGTGCAGAAGCAGTTTCAGCTGAGAATCTAGAAGATGCTAACAAGATGTTGCTTGAGATTTCTCAACTGTCAACACCATTTGGTACATCAGCACAACGTGTGGCAGCTTATTTCTCGGAAGCCATATCAGCAAGGTTAGTGAGTTCATGTTTGGGAATATATGCCACTTTGCCACATACCCATCAAAGCCACAAGGTAGAATCAGCATTCCAAGTGTTCAATGGCATTAGTCCATTTGTGAAGTTCTCACACTTCACAGCAAACCAAGCTATACAAGAAGCTTTTGAAAGGGAAGAGAGGGTGCATATCATAGATCTGGACATAATGCAGGGGTTACAGTGGCCTGGTTTGTTTCACATTCTGGCTTCAAGACCTGGTGGACCCCCTTATGTGAGGATCACAGGGCTTGGTACCTCCATGGAAGCACTTGAAGCCACGGGCAAGAGGTTGTCTGATTTTGCTAACAAACTTGGCCTTCCATTTGAGTTCTTTCCAGTGGCTGAGAGAGTTGGGAACCTTGACCCCGAGAGGCTCAATGTAAGCAAAACCGAAGCAGTTGCTGTTCACTGGCTGCAACATTCCCTCTACGATGTTACTGGTTCAGACACAAACACTTTGTGGCTCTTGCAGAGGTTGGCACCTAAAGTAGTGACTGTGGTAGAGCAGGACCTGAGCAACACAGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTATTCAGCATTATTTGATTCTCTTGGGTCAAGCTATGGTGAAGAAAGTGAGGAGAGACATGTGGTTGAACAGCAACTATTGTCTAGAGAGATTCGTAATGTGCTAGCTGTCGGGGGGCCATCAAGGACTGGAGAACCAAAGTTTCACAACTGGAGGGAAAAGCTTCAACATTGTGGTTTTAGGGGTATATCTCTAGCTGGTAATGCTGCAACTCAAGCTAGTTTACTACTTGGTATGTTCCCATCTGAAGGGTATACCTTAGTGGAGGACAATGGTATCCTTAAACTTGGTTGGAAAGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCTTTTCATAGTAACACAGCCATTACCCATCACAACTAG 2499 0.4402 MAACALFSGGGNITEDSNVNNNGGSATSPLTSASNSSNMSGEEHNPLHGMTQPHCERKMVRKRMASEMEVHATPPHNSSSTSDYPRFPRRNSTNMNLGTLEKGATTTATTLAAGTCCNNNNNSNSNNYHYNNSNSNNNSNASNISSRDNVAIPNYPTVTVTTNYSTMMLPSSINPSGVSPNYSHQHHHFQGLIESQSQSQSQDHNNPVPAVCGFSGLPLFPSQSQRNNRDNNNNNNNNNNNIRNSGANIVDVVASSSSSSMEDTSAAASNWIDGILKDLIHSSNNVSIPQLISNVREIIYPCNPNLAMVLEYRLRLLLTESTTPNKRSTEGVPLPPSVSSAKLMNRVDGIVPNLHFTDSSGAAVVVNQQMLSNWGVPQITHHHDTSNSNNNNSNNNPSVSLVTLPSPPSTTPHYSPSQEKQRHENHPPEEDLGTTSSAEVAFTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVESAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRITGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAERVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQHCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHSNTAITHHN* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2244 832 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 180 821 IPR005202 -
Apr1g2244 832 MobiDBLite consensus disorder prediction 127 150 - -
Apr1g2244 832 MobiDBLite consensus disorder prediction 378 416 - -
Apr1g2244 832 MobiDBLite consensus disorder prediction 70 97 - -
Apr1g2244 832 MobiDBLite consensus disorder prediction 175 208 - -
Apr1g2244 832 MobiDBLite consensus disorder prediction 6 51 - -
Apr1g2244 832 ProSiteProfiles GRAS family profile. 454 819 IPR005202 -
Apr1g2244 832 PANTHER PROTEIN SCARECROW 180 821 - -
Apr1g2244 832 MobiDBLite consensus disorder prediction 221 246 - -
Apr1g2244 832 MobiDBLite consensus disorder prediction 11 45 - -
Apr1g2244 832 MobiDBLite consensus disorder prediction 441 455 - -
Apr1g2244 832 Pfam GRAS domain family 464 819 IPR005202 -
Apr1g2244 832 MobiDBLite consensus disorder prediction 378 455 - -
Apr1g2244 832 MobiDBLite consensus disorder prediction 72 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2244 Apr-Chr1 31907093 31910570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2244 444 820 GRAS Transcription Factor Family AT3G54220 84.817 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr1g2244 GRAS 3.4e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2244 - - gmx:100806779 1256.51