Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2242 ATGGGCAATTGCGGTACCAGAGAGGAATCAGCAGTAGTTTCCAATGCTCAAGTTCAGCAGCTTCACCATGCGACGTCGTTGAGCGCAAGTGCCAGGAGTCAAAATGCCGGTGGCGTCGGTGAGAAGAAGCACGGTCACAGGCACAATCTGAGCGAGTGCGCTTCGGATCTGAGCGAGTCTTGTTCGACACCGCGCGGTAACAATAGCAGTAGCAGCAACAACACGCTGCTTTATACGCACGTGATCGCGTTCACGCTTTATGAGTTGGAGACCATAACCAAGAGTTTTCGTGGGGACTATATATTAGGCGAAGGAGGGTTCGGCACTGTTTACAAAGGGTACATTGATGAGAACGTTAGGGTGGGACTGAAGTCACTCCCTGTTGCGGTTAAGGTCTTGAACAAGGAAGGGTTACAGGGACATCGAGAGTGGCTTACGGAGGTGAATTTTCTAGGGCAGCTAAGGCATCCTAATCTTGTGAAGTTGATTGGTTATTGCTGTGAGGATGATCATAGGCTGCTTGTCTATGAGTTCATGTTTCGAGGAAGTCTAGAAAATCACCTGTTCCGAAAGGCAACTGTTCCTTTATCATGGGCGACAAGAATGATGATTGCTCTTGGAGCAGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCAGTAATCTATCGTGACTTCAAAACATCTAATATATTATTGGACTCTGACTATACTGCCAAGCTTTCTGATTTTGGGCTGGCTAAAGCAGGACCACAAGGTGATGAAACCCATGTATCCACTCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATACGTGATGACTGGCCACCTGACGGCTAGGAGTGATGTCTATAGCTTTGGTGTTGTTCTTTTGGAGCTTTTAACGGGAAGGAAATCTGTTGACAAGACCAGACCTGGAAAGGAACAGAGCTTGGTAGATTGGGCACGGCCAAAGCTCAATGACAAGAGAAAGCTCCTACAAATAATTGACCCTAGATTGGAGAATCAATACTCGGTGAGGGCGGCACAAAAAGCATGTAGCTTGGCTTATTACTGCTTGAGTCAAAATCCCAAGGCAAGGCCACTAATGAGTGATGTAGTTGAGACATTGGAACCCTTACAAAGTTCTAGTGTTGGTGCTGGTGAAGTCTCGTTATCTGGATCAAATAGTGGGAGTGCTGGGCCTTTTGCTATGAACAAAATCTCTGACTACCGGATGCGTCACAAGTTTTCAAACAATGTTGGTCCAGGTGCTACTTGTCGATCTCCAAACCCAAATTGTTCACCAGGTGCCCCAGCAGCTTTAAGGGTCAGATGA 1326 0.4713 MGNCGTREESAVVSNAQVQQLHHATSLSASARSQNAGGVGEKKHGHRHNLSECASDLSESCSTPRGNNSSSSNNTLLYTHVIAFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGAGEVSLSGSNSGSAGPFAMNKISDYRMRHKFSNNVGPGATCRSPNPNCSPGAPAALRVR* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2242 441 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 39 428 - -
Apr1g2242 441 MobiDBLite consensus disorder prediction 23 49 - -
Apr1g2242 441 CDD STKc_IRAK 102 376 - -
Apr1g2242 441 PANTHER OS01G0588500 PROTEIN-RELATED 39 428 - -
Apr1g2242 441 Gene3D Transferase(Phosphotransferase) domain 1 179 386 - -
Apr1g2242 441 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2242 441 Pfam Protein tyrosine and serine/threonine kinase 101 373 IPR001245 GO:0004672|GO:0006468
Apr1g2242 441 MobiDBLite consensus disorder prediction 418 441 - -
Apr1g2242 441 ProSitePatterns Protein kinases ATP-binding region signature. 102 131 IPR017441 GO:0005524
Apr1g2242 441 SUPERFAMILY Protein kinase-like (PK-like) 69 374 IPR011009 -
Apr1g2242 441 Gene3D Phosphorylase Kinase; domain 1 57 178 - -
Apr1g2242 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2242 Apr-Chr1 31875354 31879166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2242 84 386 Glycoside Hydrolase AT3G07070 53.595 4.23e-108 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr1g2242 PK_Tyr_Ser-Thr 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2242 - - gmx:102662348 845.884