Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2218 ATGGAGGATGCACGTAAGGATCAAGACAAAGAAGTGAAGTACCGTGGTGTGAGGAGCAGGCCATGGGGTAAGTTTGGGGCAGAAATTAGAGACCCAACAAAACCTACGGGAAGACAATGGTTAGGGACATTTGATACCGCAGAAGAAGCTGCTAGAGCTTATGATCGTGCAGCTATTGGTTTGAGGGGTGCTCTTGCAATCCTTAATTTTCCCGATGAATACTATTCTCATCTTCCTCATGTATCCTCGTCGTCTTCTACTAATGTTGTTGGAACTTCTTCTTCTTCTTCTGCTCCCCAGAGGGAAGTTATTGAGTTTGAGTATTTGGATGACAAGGTGTTGGAAGACCTTCTTCAGTCAGAAGAAGAGAGGAGAAAGAATAAAGACTAA 390 0.4385 MEDARKDQDKEVKYRGVRSRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYYSHLPHVSSSSSTNVVGTSSSSSAPQREVIEFEYLDDKVLEDLLQSEEERRKNKD* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2218 129 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Apr1g2218 129 SUPERFAMILY DNA-binding domain 13 73 IPR016177 GO:0003677
Apr1g2218 129 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Apr1g2218 129 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
Apr1g2218 129 Gene3D AP2/ERF domain 12 72 IPR036955 GO:0003700|GO:0006355
Apr1g2218 129 PANTHER ETHYLENE RESPONSE FACTOR 1 123 - -
Apr1g2218 129 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Apr1g2218 129 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Apr1g2218 129 PANTHER DNA-BINDING DOMAIN 1 123 IPR044808 GO:0003700|GO:0009873
Apr1g2218 129 ProSiteProfiles AP2/ERF domain profile. 13 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2218 Apr-Chr1 31624514 31624903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2218 9 125 AP2-EREBP Transcription Factor Family AT3G23230 61.600 1.83e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr1g2218 AP2 2.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2218 - - gmx:100807295 177.563