Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2217 ATGGGGGATCAAGACAAAGAAAGGGGAGGTGAAGAAGTGAAGTACCGTGGTGTGAGGAAAAGGCCATGGGGTAAGTTTGGGGCAGAAATTAGAGACCCAACAAAACCTACGGGAAGACAATGGTTAGGGACATTTGATACAGCAGAAGAAGCTGCTAGAGCTTATGATCGTGCAGCCATTGCTTTGAGAGGTTCTCTTGCAATCCTTAATTTTCCCGATGAGTACTATTCTCATCTACCTCATGTATCCTCGTCGTCTTCTACTAATGTTGTTGGAACTTCTTCTACTTCACGATGGAAGGGAGTTATTGAATTTGAGTGTTTGGATAACCAGGTTTTGGAAGATCTTCTTGAGTCATCGGAAGTGAAGAAAAGGAATTATGAAGGCTAA 390 0.4282 MGDQDKERGGEEVKYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIALRGSLAILNFPDEYYSHLPHVSSSSSTNVVGTSSTSRWKGVIEFECLDNQVLEDLLESSEVKKRNYEG* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2217 129 Pfam AP2 domain 14 64 IPR001471 GO:0003700|GO:0006355
Apr1g2217 129 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Apr1g2217 129 Gene3D AP2/ERF domain 13 73 IPR036955 GO:0003700|GO:0006355
Apr1g2217 129 PANTHER ETHYLENE RESPONSE FACTOR 4 122 - -
Apr1g2217 129 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Apr1g2217 129 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Apr1g2217 129 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Apr1g2217 129 PANTHER DNA-BINDING DOMAIN 4 122 IPR044808 GO:0003700|GO:0009873
Apr1g2217 129 ProSiteProfiles AP2/ERF domain profile. 14 72 IPR001471 GO:0003700|GO:0006355
Apr1g2217 129 SUPERFAMILY DNA-binding domain 14 74 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2217 Apr-Chr1 31615915 31616304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2217 11 124 AP2-EREBP Transcription Factor Family AT3G23230 54.839 6.46e-39 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr1g2217 AP2 5.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2217 - - gmx:100796977 189.889