Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2212 ATGGTCTTCTCAACTGCCTTTCTCCATGAAGATGGCCCCATTTTTTCTAGAAAAAGGCCAAGAGTGTCAGATCTTGGACTTCAAGATATAGATTTACGTGCAGATGCAGGAATTTGCAGTGATATTTCCTTGTTCTTGCACCAAAATGTAGAAAGGAGCACTAGTGATATTCCCTCTTCCAGCAATATTGATGATAAAGTTGATCCTGATTCTGGAATGGAGATGAACTGCCCATCGATTGTTAATAGTGGTGATGTTCCTGTGTGTTCTCCTACAGGGAATATTTCGCGCATGGACCAGAGTTTCTGTGGCTATGTGCAACAGCCTGCTTTTGTGAGTGGATGGATGTATGTAAATGAAAATGGGCAAATGTGTGGTCCCTATATTAAGGAGCAGTTATATGAGGGTCTAACTACTGGTTTCTTGCCATTTGAGCTTCCTGTGTATCCTGTGATTAATGGCACAATAATGAACCCTGTACCATTGAATTACTTCAAGCAGTTTCCTGATCATGTTTCCACTGGGTTTGCATATCTTAATATGAGTATCTCAGGCACAAGGATGCCTACAAATTGCTTCTCCTCTTCTTATAAGGAGATGGGAGTATATGAACAGGATAGATCTTTAGAGCATGCTGCTCCACTGACTGTTAACCCTGATTCACTGTCTGTTTCACAGTCTCATGTCAATTACTGTGTTAAGGAATCCAACCACTTAAATTCAAACTCAGAGGCATTCAACAGCATAATATTTTGTCAGATGTCAGGTGAAGAGTGCTGTTGGCTTTATGAGGACGAAAAGGGTATGAAACATGGGCCGCATTCTATTTCAGAATTGATTTCCTGGCACCACCATGGATATCTTAAAGATTCAACTGTGATTTCTCATTCTGACAAGAAGTGTTGCCCCTTTGCACTACTGTCTGCTGTAAATGCATTGAAAGGAGATATCTCTGGAACCATTTGTAGATCAGGTTCCACAAGCAATGAGGCTGGTGATATGGTAAACTTAATTTGTGAAATATCTAAAAACATTTCTTCCCAATTGCACGTGGGAATCATGAAAGCTGCTCGCAGAGTTGTGCTGGATGGGATTCTTGGGGATATCATTGCAGAGTTTGTTACTGAAAAGAAACATAAGAGGCATAAGCCTGAATCAGCTGACCAGACTTCTGAAACTTGCGTATTGGACACCATGATGTCTAAGTCTTCTGTGGAGATGAGTAAAGGGACTGTCATTGCCAGTGATCCTGCAGCTTCCCACATTTTAGATGATCAAGCTTGTCATGAAAGTTCCAGATCATCTTCAACAACCATTAAATCAGTTGGAAGTGTTGAAAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTACTTCTTGATTATTGCATGCAAGTCATGTGGAATGCAGTGTTTTTTGACACTCTAGCAGAGCACTTATCTTCCTGGAGGAAGAGGAAGCTTTGGTCTCATCCCAAGCCTCAACCATCTATTAATGGATGTAAAGATCATGCTGAAAAGAGTGTATCAGAAGCTTCAGTTCTCAAGCAAGATTCCTTTGAATGCAATGGTGATGGCTATAATCAGTTCGGAATACTGGCGAATAAAATAAATTATCATCCTCAGTTATTTTTGCCTCATAGTAGCCTCAAAGGTGGAAATTTATTAGAAGGTCATAGAGTTTCAAGCTCTTGTCATAACACTAAAGATGTGACATGCATTCTTGAAAGTGTGGAGAATGAGCTTTACTTCTCTTCAAAGGTGTCTTTAGCTGATTACATTCAAAGTTTTGTTGAAAAGGAAATGAACAAATTAATTACTTCCCTAGAAGCAGACAAATTGAATGAGGTTGATGTTAGTGACCGTGGTTTTTCAGAGATACTTTCTGGTAAATCATCTGTGAAGGAAATTCTAAATGACAATTCGATGGATTCTGTAAAAGCTGGGGATTCATTTTGCAAGTCTGCATCTGGAAACCATATGTCTAATGTTTTTTCAAAAGCATTTAAGGAATTGTGTGGATATGTAGATGATGTGGTTGATGAAGAGGATCTTACTGACCTACCACCTGGATTTGAAGAGAAATCTAGAAGAGGTGTCCCTTGCTACAATTCAAGATTTCGACCTTCAAGGTTGGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAGCTGCGCTGTGCCGACAGAAGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTCATCGCATCTTGATTCAATGTTCAATCAAGTTTTTATGTCATCAGGTGCCATAAAGAAACATTATCAGTCTAACTGCCATGAGAAAGGAAAAGCATTCAATGCAAACAAGGAACTTTTGAATCATGCTACTTCTGGACTGGGAAGAGTGAAGGAAGGAGCAAATAATTCTTCTGAAGTTCCTCTGGTGAGTGGGAAGTATACATATTATCGGAAGAAGTTGTCACGGAAAGAATTATTTCCCTCTCAATCTGTAGCAAAAGATGATTCTGGGCCAGGGAAGCAGCCTGTGGCTAAGTTGAGGAAACATGTTTCTGGAGATGGAAACAAGACTGCAGAAGTTAAAATGGCTTCTGTTAAACACAGAAAGACTAGAATTATTAAAGGGAAGAAGGATACATCTTCTAAAGGCAGGTCTTCTGTTAATGTCACTGATAGCTCGCAGGGTGATCAATTATCCTTGAAGAATAAAACTGGTCGGAAAGTGTTGAAATTTTCAAGTAAAGTTCAAAATGATGTTATGAATGTTGTAAAATCTAATGTAAAGAGGGCTTCAGCGTCAACTGATAATAGTGTTGGTATGAAGAAGATTGTCAAAACTGATGGCTGTGATGGCACCGTCAAAGGAAAGTCCACTGATCATTGCTCCAAAGAGATACAAAACGCAACAAATAAAGTGTCAAAATTAAAGAGGAAGCATCAAATGGATGGTACGGCATCTTCACATCGTACGAAGGTTTCAAAAATTTCAAATGATGATGCTAATCTGGGAGCCAGTAAACAGGTTACTGAAGCAAGGAGGAAATCTGCTAAATCCAAGCCATTTAATTTATGTCTTAGATCTGATGGATGTGCTAGGACTTCTATTGATGGGTGGGAATGGCATAAATGGTCTCGAAGTGCCAGTCCTGCATATAAAGCACGTGTCAGGGGTCTTTCATGTGTGCAGAAGAAGTGCATAGATTCTGAAAATAATTTATCTCAGTTGTCAAATGGTAAGGGTCTTTCTGCAAGAACGAATAGGGTGAAATTGCGTAACCTTCTTGCTGCTGCGGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCGCTTACGTTTTCAAAGGAGCAAGATACATGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAGGCGGAGGATTTTGTGATTGAATATATTGGAGAACTAATTCGTCCTCGGATCTCTGATATCCGTGAACGTCAATACGAGAAGATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGCTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTGTTAACCACTCTTGTGAGCCCAACTGCTATACAAAGGTTATATCTGTTGAAGGTCAAAAGAAAATTTTCATATATGCAAAACGGCATATAGCTGCTGGTGAAGAAATTACATACAACTATAAGTTCCCCTTAGAGGAAAAAAAGATTCCATGCAACTGTGGTTCCAAAAAATGTCGTGGATCATTGAATTAG 3744 0.3969 MVFSTAFLHEDGPIFSRKRPRVSDLGLQDIDLRADAGICSDISLFLHQNVERSTSDIPSSSNIDDKVDPDSGMEMNCPSIVNSGDVPVCSPTGNISRMDQSFCGYVQQPAFVSGWMYVNENGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLNMSISGTRMPTNCFSSSYKEMGVYEQDRSLEHAAPLTVNPDSLSVSQSHVNYCVKESNHLNSNSEAFNSIIFCQMSGEECCWLYEDEKGMKHGPHSISELISWHHHGYLKDSTVISHSDKKCCPFALLSAVNALKGDISGTICRSGSTSNEAGDMVNLICEISKNISSQLHVGIMKAARRVVLDGILGDIIAEFVTEKKHKRHKPESADQTSETCVLDTMMSKSSVEMSKGTVIASDPAASHILDDQACHESSRSSSTTIKSVGSVENFWWSYAVVRKVLLDYCMQVMWNAVFFDTLAEHLSSWRKRKLWSHPKPQPSINGCKDHAEKSVSEASVLKQDSFECNGDGYNQFGILANKINYHPQLFLPHSSLKGGNLLEGHRVSSSCHNTKDVTCILESVENELYFSSKVSLADYIQSFVEKEMNKLITSLEADKLNEVDVSDRGFSEILSGKSSVKEILNDNSMDSVKAGDSFCKSASGNHMSNVFSKAFKELCGYVDDVVDEEDLTDLPPGFEEKSRRGVPCYNSRFRPSRLVECNPKITEYVAAALCRQKLHDEVLEEWKSSHLDSMFNQVFMSSGAIKKHYQSNCHEKGKAFNANKELLNHATSGLGRVKEGANNSSEVPLVSGKYTYYRKKLSRKELFPSQSVAKDDSGPGKQPVAKLRKHVSGDGNKTAEVKMASVKHRKTRIIKGKKDTSSKGRSSVNVTDSSQGDQLSLKNKTGRKVLKFSSKVQNDVMNVVKSNVKRASASTDNSVGMKKIVKTDGCDGTVKGKSTDHCSKEIQNATNKVSKLKRKHQMDGTASSHRTKVSKISNDDANLGASKQVTEARRKSAKSKPFNLCLRSDGCARTSIDGWEWHKWSRSASPAYKARVRGLSCVQKKCIDSENNLSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFVNHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCNCGSKKCRGSLN* 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2212 1247 MobiDBLite consensus disorder prediction 877 896 - -
Apr1g2212 1247 MobiDBLite consensus disorder prediction 822 896 - -
Apr1g2212 1247 MobiDBLite consensus disorder prediction 964 987 - -
Apr1g2212 1247 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 52 1247 IPR044570 GO:0042800|GO:0051568
Apr1g2212 1247 MobiDBLite consensus disorder prediction 835 861 - -
Apr1g2212 1247 Pfam SET domain 1120 1224 IPR001214 GO:0005515
Apr1g2212 1247 SMART PostSET_3 1231 1247 IPR003616 -
Apr1g2212 1247 ProSiteProfiles GYF domain profile. 258 314 IPR003169 GO:0005515
Apr1g2212 1247 SUPERFAMILY GYF domain 253 311 IPR035445 -
Apr1g2212 1247 ProSiteProfiles Post-SET domain profile. 1231 1247 IPR003616 -
Apr1g2212 1247 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 52 1247 - -
Apr1g2212 1247 SMART set_7 1108 1231 IPR001214 GO:0005515
Apr1g2212 1247 CDD SET_SETD1 1096 1243 - -
Apr1g2212 1247 SUPERFAMILY SET domain 1103 1244 IPR046341 -
Apr1g2212 1247 Coils Coil 953 973 - -
Apr1g2212 1247 Gene3D - 251 330 IPR035445 -
Apr1g2212 1247 ProSiteProfiles SET domain profile. 1108 1225 IPR001214 GO:0005515
Apr1g2212 1247 Gene3D SET domain 886 1247 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2212 Apr-Chr1 31525054 31538733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2212 1107 1247 C2H2 Transcription Factor Family AT2G23740 36.810 8.33e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr1g2212 SET 5.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2212 - - gmx:100805708 1919.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2212 1 31525054 31538733 Apr1g2212 1 31525054 31538733 ECH