Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2210 ATGGCGCCGGGTGTTAGAGACTTGCAGCTCACTTCCCTCTCCGGCGACCGCAAAATCACCGCCGAAGACTCCGATGACCTCGAGGACGTGCGCCTCCTCGACTCCTACGATCAAATCGATGCCGGAATGAGGCAGATTCAGGTGAGCATCACCGGCATGACTTGCGCCGCTTGCTCCAATTCCGTCGAATCAGCTCTCAAAGCTCTCGACGGCGTTCTCAGTGCCTCCGTCGCGCTTCTCCAGAACAAAGCCGACGTCGTTTTCAACCCTGCTCTGCTCCAGGATGAAGACATAAAAAATGCAATTGAAGATGCAGGGTTTGAAGCAGACATATTACCTGAATCCAGTACAGTTGGAAAGATACCACATGCAACACTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCATGTGTAAACTCTGTTGAAGGTATTTTAAGAAATCTTCCAGGGGTTAAAAGGGCTGTGGTAGCTTTGGCTACTTCGTCAGGTGAAGTTGAGTACGATCCCAGTGTAATTAGTAAAGATGATATAGTCAATGCAATTGAAGATGCTGGTTTTGAAGCTTCATTTGTACAAAGCAATGAGCAGGATAAAATAATTTTAGGGGTTGTTGGTGTGTTCAGCCTGATTGATGCACAAGTTTTAGAAGGCATTCTTAGCAGCACAAAAGGAGTAAGACAGTTTCATTTTGATCAGCTATCGGGTGAATTGGATGTTCTGTTTGATCCCGAAGTTCTCAGTTCTAGATCCATAGTTGATGCGATCCAGGGGGGAAGCAATGGAAAGTTTAAATTACATGTTAGAAGCCCTTATACAAGGATGGCTTCTAAAGACGGTGAAGAGACCTCAACTATGTTTCGGCTCTTTATCTCCAGTCTGTTTCTTAGTATTCCTCTTTTCTTCATGAGGGTAGTTTGTCCTCATATACCACTTGTGTATTCCTTATTACTTCGGCGATGTGGGCCTTTCCTCATGGGTGATTGGTTGAAATGGGCATTAGTGAGTCTCATCCAATTCGTGATTGGTAAGCGCTTCTACATTGCAGCTGGCAGAGCTCTTAGAAATGGTTCAACAAATATGGATGTCCTGGTTGCAGTGGGAACTACAGCTTCTTATGTTTATTCCGTTTGTGCACTTCTATATGGAGCTCTTACTGGATTTTGGTCCCCAACATACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGAAAATATTTGGAATGTCTCGCCAAGGGCAAGACATCTGATGCCATCAAGAAATTAGTAGAACTTGCTCCTGCAACAGCTTTATTAGTTGTCAAAGATAAAGGTGGTAGATCTATTGAAGAAAGGGAAATTGATTCTTTGCTTGTTCACCCTGGTGACACATTAAAAGTTCTTCCTGGTGCAAAGGTTCCTGCTGATGGTATTGTTACTTGGGGATCAAGTTATGTAAATGAGAGCATGGTAACTGGTGAATCTGTACCCATTTCAAAGGAGGTGAATGCTTCTGTTATTGGTGGTACAATAAATTTGCATGGTGTCCTTCACATTGAAGCTACCAAAGTAGGATCTGACACAGTTTTGAGTCAGATTATTAATTTGGTTGAGACTGCCCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTTGCTAGCATATTTGTTCCTACAGTTGTTTCTTTGGCATTATTGACTTTTTTGGGCTGGTATATTGCTGGCTCTATTGGAGCTTACCCAGAAGAATGGCTGCCAGAAAATGGAAATAACTTTGTATTTGCCCTGATGTTCTCAATATCTGTAGTAGTGATTGCATGTCCCTGTGCGCTTGGCTTGGCAACACCAACGGCTGTCATGGTAGCAACAGGGGTTGGTGCTAACAATGGAGTGTTGATTAAAGGGGGAGATGCCTTGGAGAGGGCTCAGATGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCACTGTTACTACTGCCAAGGCATTCACAGGATTGGAGCGTGGAGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCTTTGGCCAAAGCGATATTAGCATATGCACGGCATTTTCATTTCTTTGATGACTCTTCTGCTCTTACTGACACTGAGAATGATGCAAAGCCTCGGTGGCTTTTTGATGTCTCAGACTTCTCTGCTCTTCCAGGAAGAGGTGTTCAATGCTTGATTGATGGAAAGCGTATTCTGGTTGGTAACAGGAAATTGATGGTGGAAAGTGGCATAGATATTTCAACAGAAGTGGAAAATTTTGTGGTAGAGCTGGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATATGATGATATAGTAATTGGAGTCTTGGGGGTTGCAGACCCACTAAAGAGAGAAGCTTCTGTAGTTATAGAGGGCCTTCAGAAAATGGGTGTCACACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGTGCTGTTTCCAAGGAGGTTGGCATCCAAGATGTTAGGGCAGAGGTTATGCCTGCGGGAAAGGCTGATGTTGTTCGTTCATTCCAAAAGGATGGGAGCATAGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCCTTAGCTGCTGCTGATGTTGGTATGGCAATTGGAGCTGGAACTGATATTGCAATAGAAGCTGCTGACTATGTGTTGATGAGAAATAACCTGGAAGATGTGATCACAGCCATTGATCTTTCCCGGAAGACTTTTACTCGTATTCGATTGAATTACGTATTTGCCATGGCTTACAATGTTGTGGCTATACCAGTTGCTGCTGGGGTTTTGTATCCTTCACTGGGAATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTTGTTTGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCCAAACTTACTACAATACTTGAAATAATTGTAGAATAG 2979 0.4357 MAPGVRDLQLTSLSGDRKITAEDSDDLEDVRLLDSYDQIDAGMRQIQVSITGMTCAACSNSVESALKALDGVLSASVALLQNKADVVFNPALLQDEDIKNAIEDAGFEADILPESSTVGKIPHATLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSSGEVEYDPSVISKDDIVNAIEDAGFEASFVQSNEQDKIILGVVGVFSLIDAQVLEGILSSTKGVRQFHFDQLSGELDVLFDPEVLSSRSIVDAIQGGSNGKFKLHVRSPYTRMASKDGEETSTMFRLFISSLFLSIPLFFMRVVCPHIPLVYSLLLRRCGPFLMGDWLKWALVSLIQFVIGKRFYIAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGRSIEEREIDSLLVHPGDTLKVLPGAKVPADGIVTWGSSYVNESMVTGESVPISKEVNASVIGGTINLHGVLHIEATKVGSDTVLSQIINLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTFLGWYIAGSIGAYPEEWLPENGNNFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKATVTTAKAFTGLERGEFLKLVASAEASSEHPLAKAILAYARHFHFFDDSSALTDTENDAKPRWLFDVSDFSALPGRGVQCLIDGKRILVGNRKLMVESGIDISTEVENFVVELEESAKTGILVAYDDIVIGVLGVADPLKREASVVIEGLQKMGVTPVMVTGDNWRTARAVSKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFTRIRLNYVFAMAYNVVAIPVAAGVLYPSLGIKLPPWVAGACMALSSVSVVCSSLLLKRYRRPKLTTILEIIVE* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2210 992 Gene3D - 656 745 IPR023299 GO:0000166
Apr1g2210 992 Gene3D - 746 797 IPR023299 GO:0000166
Apr1g2210 992 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Apr1g2210 992 PRINTS P-type cation-transporting ATPase superfamily signature 649 663 - -
Apr1g2210 992 PRINTS P-type cation-transporting ATPase superfamily signature 791 802 - -
Apr1g2210 992 PRINTS P-type cation-transporting ATPase superfamily signature 813 823 - -
Apr1g2210 992 PRINTS P-type cation-transporting ATPase superfamily signature 866 885 - -
Apr1g2210 992 PRINTS P-type cation-transporting ATPase superfamily signature 889 901 - -
Apr1g2210 992 ProSitePatterns Heavy-metal-associated domain. 50 80 IPR017969 GO:0046872
Apr1g2210 992 SUPERFAMILY Calcium ATPase, transduction domain A 449 535 IPR008250 -
Apr1g2210 992 Gene3D - 417 539 - -
Apr1g2210 992 Pfam Heavy-metal-associated domain 130 190 IPR006121 GO:0046872
Apr1g2210 992 Pfam Heavy-metal-associated domain 48 108 IPR006121 GO:0046872
Apr1g2210 992 CDD HMA 129 192 IPR006121 GO:0046872
Apr1g2210 992 Pfam haloacid dehalogenase-like hydrolase 645 880 - -
Apr1g2210 992 SUPERFAMILY HAD-like 648 972 IPR036412 -
Apr1g2210 992 SUPERFAMILY HMA, heavy metal-associated domain 40 113 IPR036163 GO:0046872
Apr1g2210 992 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Apr1g2210 992 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 402 669 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2210 992 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 737 947 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr1g2210 992 Gene3D - 616 923 IPR023214 -
Apr1g2210 992 PANTHER HEAVY METAL P-TYPE ATPASE 19 985 - -
Apr1g2210 992 Gene3D - 43 114 - -
Apr1g2210 992 ProSiteProfiles Heavy-metal-associated domain profile. 45 111 IPR006121 GO:0046872
Apr1g2210 992 ProSitePatterns E1-E2 ATPases phosphorylation site. 651 657 IPR018303 -
Apr1g2210 992 ProSiteProfiles Heavy-metal-associated domain profile. 127 193 IPR006121 GO:0046872
Apr1g2210 992 SFLD p-type atpase 631 918 IPR044492 -
Apr1g2210 992 Gene3D - 128 193 - -
Apr1g2210 992 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 363 975 IPR027256 GO:0006812|GO:0016021|GO:0019829
Apr1g2210 992 SUPERFAMILY Calcium ATPase, transmembrane domain M 384 941 IPR023298 -
Apr1g2210 992 SUPERFAMILY HMA, heavy metal-associated domain 128 198 IPR036163 GO:0046872
Apr1g2210 992 TIGRFAM TIGR00003: copper ion binding protein 129 191 IPR006122 GO:0005507
Apr1g2210 992 TIGRFAM TIGR00003: copper ion binding protein 45 109 IPR006122 GO:0005507
Apr1g2210 992 PANTHER ATP7, ISOFORM B 19 985 - -
Apr1g2210 992 SFLD Haloacid Dehalogenase 631 918 - -
Apr1g2210 992 CDD HMA 47 109 IPR006121 GO:0046872
Apr1g2210 992 CDD P-type_ATPase_Cu-like 290 962 - -
Apr1g2210 992 Pfam E1-E2 ATPase 432 628 - -
Apr1g2210 992 PRINTS Copper-transporting ATPase 1 signature 45 70 - -
Apr1g2210 992 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Apr1g2210 992 PRINTS Copper-transporting ATPase 1 signature 100 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2210 Apr-Chr1 31505635 31512888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2210 1 992 Primary Pumps ATPases AT5G44790 74.232 0.0 1509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2210 K17686 - gmx:100804960 1765.36