Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2194 ATGGCTTCTTTTCCTCTTTATCACCCAACCCAGACCTTCTTCTCCAACACCCAGTTCAAAGGTTCGCGCAGTGGCTTCTTGTGCCGACCCACTTACTCATTTGGTTCTCATGCTCGAAACAAAGCACCACCCATCAAAGCTTTGGTTGATGCACCCCCATTTCCATTGTTTCGGCCTCCCCAAGTTGAAGAATCATCATCCTCTGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATTGGTTATGTCCGAAGTGTGCGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCTGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAGCCTCTTCGCCGAGAAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCCATGGATCATCCAATATTTGATATTATCAACTCGACAAATCCAGAGACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATTTGCGTTTGACTGTGAAGACAACTTTTGGCAATTGTATGGCGACTTCTTACCCAGTGCAGATGAATGCACTAGCTTACTTCTAGCCTCAGAGGAGGAACTTTTGGAGCTGCAGGATCCCCGTCTTGCTTCAACTATGAGAAACCAGCAACAAAGAGCCTTAGAATTCTGGGAGAATAACTGGCACAGTGCTGCACCCCTTAAAATAAAGTGTCTTGCTCGTGATCCTCAAAGGTTCATTTGGGCTGTAAGTGTTGCACAGTCACGATGTATTAACATGCAGATGAGAATTGGTGCTCTAAATCAAGAAGCAAATATGCTGATTCCTTATGCTGACATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTACAAATGCTGGACAGCGCATTAAAAAGGGAGATGAGATGACAGTCAATTACATGAGTTCGCAGAAGAATGACATGTTCATGCAAAGATATGGATTTTCATCGCCTGTGAATCCTTGGGATGTGATCAAATTCTCAGGAAATGCACGTATTCATTTGGATTCCTTCCTGTCAATCTTCAATATATCTGGCCTTCCTGAAGAGTATTACCATAACACAGATCGTCTATCAAACCCTGGAGATACTTTTGTCAATGGAGCAGTCATAGCTGCAGCACGAACATTGCCAACTTGGTCAGATGGGGACGTGCCTCCAGTCCCTAGTGTGGAAAGAAAGGCTGTGAAGGAGTTGCAAGACGAATGCCAAAAGATGCTTGCAGAATTTGCTACAACCTCTAAACAAGACCAGAAATTGCTAGATTCCATGACAGATGCTACAAGGACACTTGAAGCTGCAATTAAGTATAGATTGCACAGGAAATTGTTCATTGAAAAAATCATCCAAGCATTGGAGATGTATCAAGAGAAAATACTGTTTTGA 1452 0.4277 MASFPLYHPTQTFFSNTQFKGSRSGFLCRPTYSFGSHARNKAPPIKALVDAPPFPLFRPPQVEESSSSELEPADPDFYKIGYVRSVRAYGVEFKEGPDGFGVYASKDVEPLRRERVIMEIPLELMLTISKKLPWMFFPDIIPMDHPIFDIINSTNPETDWDLRLACLLLFAFDCEDNFWQLYGDFLPSADECTSLLLASEEELLELQDPRLASTMRNQQQRALEFWENNWHSAAPLKIKCLARDPQRFIWAVSVAQSRCINMQMRIGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLTNAGQRIKKGDEMTVNYMSSQKNDMFMQRYGFSSPVNPWDVIKFSGNARIHLDSFLSIFNISGLPEEYYHNTDRLSNPGDTFVNGAVIAAARTLPTWSDGDVPPVPSVERKAVKELQDECQKMLAEFATTSKQDQKLLDSMTDATRTLEAAIKYRLHRKLFIEKIIQALEMYQEKILF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2194 483 Gene3D - 360 481 IPR036464 -
Apr1g2194 483 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 50 475 - -
Apr1g2194 483 Pfam SET domain 99 322 IPR001214 GO:0005515
Apr1g2194 483 Pfam Rubisco LSMT substrate-binding 413 464 IPR015353 -
Apr1g2194 483 SUPERFAMILY SET domain 98 338 IPR046341 -
Apr1g2194 483 CDD SET_LSMT 90 337 - -
Apr1g2194 483 Gene3D set domain protein methyltransferase, domain 1 82 337 - -
Apr1g2194 483 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 478 IPR036464 -
Apr1g2194 483 Coils Coil 418 438 - -
Apr1g2194 483 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Apr1g2194 483 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 475 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr1g2194 SET 2.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2194 - - gmx:100790985 869.381