Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2193 ATGGATTTTTCAATGGAGAGCTCTCAAGGTTTTAACAAGGATCAAGATAGTCAAAAGTTCAATGAGGAAAAGCCATCCTACAACCTAACTTTTGATCAGCAAGGGCAACTTGAAGCATTTTTCGAGCGGTGCCCAAATCCAGACGAAACCCAGAGAGATCAATTAGCCAAGGAGCTTGAGCTTGAGCCGAAACAAATAAAGTATTGGTTTCAGAACAAGAGAACTGAAACAAAGATGTCTCTCCCTGCGTCACAGGCTCCTACCCTTGAAGAGGTGAACCAAGAGAACAATAATTGTGATTCTGATCAAGCTGATGCAACTTTGAATGACAATGGAATCTGCGACCCAATGAGTGGAAGTGAAGAATCTCCAGAGATGGAAAAGGCACAGATATTAAAGGTTGCAACTGCTGCTATGGAAGAACTCCTTAGGCTTACGAGTGAACCCTTTTTATGGGCCAAGTCTTCAGATGATGTAGGATTTGTGCTCATTCGTGAAAGATATGCAAAAATGTTTCCCAAGGTTAACGATAGTTTGGAAGGTCCAGATACTCATGAAGAGTCTTCAAGAGATTCAAAAATAGTGAGGATTGGTGCGATGCAATTGGTTGAAATGTTTTTAGATTCGGACAAATGGGTCAATTATTTCACACCAATCGTTTCAAAAGCAGAAACAGTCGAAGTGCTTGATGCTGGTTCGTTAACAAATCGAAATGGAGCCATGCAAGTGATGTACGAAGAAATGCACATTCTTTCACCTCTATTGCCATCTCGGACATTCTTCTTCCTTCGTTATTGTCAAGTAGTTGGTGTTGGCGTATGGGCAATAGCTGATGTGTCACTTGATTCCTTTGGAGGGCACGTTCCTCATTGTTCTGCTAGGAGGCTTCCCTCTGGGTGCATCATCCATCAACTACCAAATGGGTCTTCCATGGTTACTTGGGTTGAACATGTGAAAGTGAACGATAGGATGCAAACAAGCCCCCTCTATAGAGATCTTCTTTGTAACAATATTGCGTATGGAGCAAAACGGTGGCTTTTGGCACTTCAAAGAACGTGTGAGAGGTTTGCATGCACTTCATCAATTGAAAATTCACCCATTCATGATGCTGAAAGAGCGATAATGTCAATTGAAGGAAGGAAGTGTGTCATTAACCTCTCTAATCGAATGGTTCAAAGCTTTTGTAAAATTTTGAAATCACGAAAACAGGATTCTACACCATTTCTTGAGGAAAACAAGAACGAGATTAAGGTTTCCATTCGCATGAACACAACACCAGGCCAACCGCATGGCTTTGTTGCCACTGCTATTACTTCCATTTCGCTTCCTGTCCCTCCTCATAATATTTTTCGCTTCCTCAATAGTACGAAAAGACGACACAAGTGGGATGTTCTTTGCTGTGAAAATCGAGCGGCTGAGATTGCGTACATCTCAATTGGTGGAGCTAATGCTGCTAATCATATTTCATTTATTCAGACTCTCAATGCAAGAGAGAGCAACGTGCTGGTTTTTCAAGAAAGTTACATAGATTCTCTGGGATCATATGTTGTGTATGCTCCAATTGATGTAACAAATGCAAGAAGGATTGTAAATGGAGAGGGCTCAATGGTACATATTCTGCCTTCAGGCTTTCTAATATCAGGAGATGGTCGTGAAGTTGCTGAAACTTCTAATGGTGGAAATGCCAATCGATCACGAGGCTCGTTGTTAACTATTGGTTACCAAATACTGATTTCAAGCAAACCAAAAACTCGACACCAAAATATGGAAACTATGGAACTTACCAGTCGACTAGTCATCTCAATAGTTGAAAAGATTAAGAATGCTCTCAAATGTTCCGATTAG 1845 0.4103 MDFSMESSQGFNKDQDSQKFNEEKPSYNLTFDQQGQLEAFFERCPNPDETQRDQLAKELELEPKQIKYWFQNKRTETKMSLPASQAPTLEEVNQENNNCDSDQADATLNDNGICDPMSGSEESPEMEKAQILKVATAAMEELLRLTSEPFLWAKSSDDVGFVLIRERYAKMFPKVNDSLEGPDTHEESSRDSKIVRIGAMQLVEMFLDSDKWVNYFTPIVSKAETVEVLDAGSLTNRNGAMQVMYEEMHILSPLLPSRTFFFLRYCQVVGVGVWAIADVSLDSFGGHVPHCSARRLPSGCIIHQLPNGSSMVTWVEHVKVNDRMQTSPLYRDLLCNNIAYGAKRWLLALQRTCERFACTSSIENSPIHDAERAIMSIEGRKCVINLSNRMVQSFCKILKSRKQDSTPFLEENKNEIKVSIRMNTTPGQPHGFVATAITSISLPVPPHNIFRFLNSTKRRHKWDVLCCENRAAEIAYISIGGANAANHISFIQTLNARESNVLVFQESYIDSLGSYVVYAPIDVTNARRIVNGEGSMVHILPSGFLISGDGREVAETSNGGNANRSRGSLLTIGYQILISSKPKTRHQNMETMELTSRLVISIVEKIKNALKCSD* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2193 614 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 612 IPR042160 -
Apr1g2193 614 CDD homeodomain 24 78 IPR001356 GO:0003677
Apr1g2193 614 SUPERFAMILY Bet v1-like 380 552 - -
Apr1g2193 614 MobiDBLite consensus disorder prediction 1 15 - -
Apr1g2193 614 SUPERFAMILY Bet v1-like 124 356 - -
Apr1g2193 614 SMART HOX_1 22 84 IPR001356 GO:0003677
Apr1g2193 614 Pfam Homeodomain 28 78 IPR001356 GO:0003677
Apr1g2193 614 Gene3D - 1 79 - -
Apr1g2193 614 CDD START_ArGLABRA2_like 128 354 - -
Apr1g2193 614 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Apr1g2193 614 SUPERFAMILY Homeodomain-like 22 83 IPR009057 -
Apr1g2193 614 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 18 612 - -
Apr1g2193 614 Pfam START domain 136 355 IPR002913 GO:0008289
Apr1g2193 614 MobiDBLite consensus disorder prediction 1 26 - -
Apr1g2193 614 ProSiteProfiles START domain profile. 124 358 IPR002913 GO:0008289
Apr1g2193 614 SMART START_1 133 355 IPR002913 GO:0008289
Apr1g2193 614 Gene3D - 132 335 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2193 Apr-Chr1 31376645 31382130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2193 125 612 Homeobox Transcription Factor Family AT5G17320 38.800 3.04e-107 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr1g2193 START 1.9e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2193 K09338 - aprc:113852280 1224.92