Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2186 ATGAGAGTGCTTTTGGAGGTGAAATCGTCGTTTTCTGAAGACCCAGAAAATGTTTTGAGTGATTGGTCAGAGAACAACACAGATTACTGTAGTTGGAGAGGTGTGTCATGTGATGATGACTCGGAGCAAGTGGTGGGACTCAATCTGTCCGAGTCATCACTCAGTGGGTCAATATCATCTTCACTCGGTCGTTTGCAAAACCTGCTCCACCTCGATCTCTCTTCTAACCGCCTCAAGGGTCCCATTCCAACTACCCTTTCCAACCTCACTTCATTGGAATCGCTGATTCTTCACTCTAACCAACTCACAGGTCACATTCCCACCGAGTTAGCCTCGTTACTGAGTCTCCGAGCTTTGCGAATCGGTGACAACGGACTCAGTGGAACAATTCCCGCCTCACTTGGGAATCTGATCAACCTTGTCTACCTTGGTTTAGCCTCATGCAGACTCACCGGTCCGATTCCACCTCAACTCGGTCGACTCAGTGAGTTGGACAATCTGATCCTGCAGAAAAACGAGTTGACTGGTCCGATTCCGCCCGAGTTGGGGAACTGCTCAAGCCTCACCATCTTCACTGCTGCCGAAAACAAACTCAATGACTCGATTCCGAGTGAACTGGGTCAACTCAGGAAACTGCGTGTTCTCAACCTTGCCAACAACAGCTTAACAGGGGAGATTCCGAGTCAACTCGGTCAAATGAGTGAGCTCAAATATCTAAATTTCGTAGAGAACAAGCTTGAGGGTAACATCCCAATGTCTTTAGCTCAACTGGGTAACCTTCAAACTCTTGACTTGTCCATGAACATGCTCAGTGGGGTGATTCCAGAGGAGTTAGGCAAATTGGGTCAGCTACAATTCATGGTTCTTTCTGGTAATAAACTCAGTGGGACCATTCCAAGAACCATATGTTCCAATGCAACAAGTTTGGTGTTCTTATCGTTTTCAGGGAATGGACTTAATGGTGAGATACCAGCTGAATTGGGTCAGTGCCAATCACTGAAACAACTTGATCTGTCCAACAATTTTCTCAATGGATCAATACCTACTGAGGTTTATGACTTGTTGGGTTTATCTTTTCTTTTGCTTCACAACAATAGCTTGCTTGGTTCAATCTCTCCCTCCATAGGGAACCTCACTAAATTGCAGACACTTGCATTGTATCACAACAAGTTGATTGGTGCTCTCCCTAGAGAGATTGGGATGCTTGGGAAGTTGGAAATGATGTATCTTTATGATAATGAGTTATCAGGGAAGATTCCTTTGGAGATTGGTAACTGTTCAAGCTTGCAAAAGGTTGATTTCTTTGGGAACCACTTCAGTGGGGGAATTCCCAGCACTATTGGGAGGTTGAAGGATTTGAATTTCTTGCATATTAGGCAGAATGAGCTTGGTGGTGAGATTCCAGCCACACTTGGTAACTGTCATATGCTTGAGGTGCTGGATATGGCAGACAATAACCTCTCAGGTGGCATTCCTGCAACTTTTGGGTTCCTTAGAAAGTTGAAGCAGTTCATGCTTTACAACAATTCTCTTGAAGGTAGTATTCCTCACCAAATGATAAATGTGGCAAACTTGACAAGAGTGAATCTTTCAAAGAATAGGCTGAATGGTAGTTTGGCTGCATTGTGTAGCTCTTGGAAGTTTCTTTCTTTTGATGTTACTGATAATGAATTTGACAGTGAAATACCCTTTCTCCTGGGGAATTCACCTTATCTTGAGAGGCTAAGATTGGGTAACAACAAATTTTCTGGTGAAATTCCAAGGACATTGGGAAAAATCACTGAGTTGTCATTGTTAGACCTCTCTGGGAATTCACTTACAGGACCAATACCAGATGAGCTATCTTTGTGTCATAATCTGGCCTCCATTGATTTGAACAATAACTTTCTGTCCGCACACATGCCATCATGGCTTGGAAGTTTGCCTCAGTTGGGAGAGCTTAAGCTCTCCTTCAATCAATTTTCTGGGTCTATTCCACTAGCCCTATTCAAATTACCAAGGTTGCTGGTTCTTTCCTTGAATAACAATTATCTTAATGGAAGTCTCCCAGGTGATATTGGTGATCTTGCATCCCTTAATGTCCTCAGTCTTCACAATAACAATTTCTCTGGACCAATCCCTCATGCACTAGGTAAGTTAAGCAATCTTTATGAACTCCAGTTATCCAATAATAGCTTTAATGGTGAGATACCAACTGAAATTGGAAATCTCCAAAATCTCCAAAGCATTTTAGACCTCAGTTACAATAATCTCTCTGGTGATATCCCACCTTCACTTGGCATGCTATCAAAATTGGAAGCACTTAATATCTCTCATAATCAACTCACTGGAGAAGTCCCTTTAGTAGTTGGTGAAATGATGAGCTTGGAGAGGCTTAATATCTCATACAATAACCTTCAAGGTGCATTGGATAAGAAGTTCTCCCGCTGGCCACAAGAGGCATTTGAAGGGAACATTCATCTTTGTGGAGCCTCTCTTGGGAGCTGCAAGCATCGCGGTACTTCCCACAAGAAGCTATCAGGCTTAAGTGACACAGCAGTGGTCATAGTCTCTGCCATTTCAACTTTAGCTGCAATTGCACTTCTAGTACTTGCAGTGAGCATCTTCTTGAAAAACAAGCTAGAACTTTCCAGGAAAGGCAATGAAGTGAATTGTGTTTTGTCCTCCTCTTCAACACAAGCACGGCGATCATTGTTCCCTCTAACTTCTCCTGGAAAGAGAGATTTCAGGTGGGAAGATATCATGGATGCCACAAACAATCTAAGTGATGAGTTCATAATTGGTTGTGGAGGTTCTGGAACAGTCTATAGAGTTGAATTCCCCACTGGAGAGATTGTGGCTGTGAAGAGGATTTCATGGAAAGATGATTATTTGTTAAACAAAAGTTTTATAAGAGAAGTTAAGACTTTGGGGAGGATCAAGCATAGGCATCTGGTGAAACTGATAGGTTGTTTTAGCAATAGAAACAAGGGAACTGGTTGGAATCTGTTGGTATATGAGTATATGGAGAATGGGAGTGTATGGGATTGGCTACATGGAAAACCCCTCAAGCCAGGTAAAGCAAATGGGTGCCTTGATTGGGATACAAGGTTCAAAATTGCTGTGGGATTGGCTCATGGAGTGGCGTACCTCCATCATGATTGTGTGCCAAAGATCATTCACAGGGATATCAAATCCAGTAACATTTTACTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTGGCAAAACCACTCATTGAGAATCAGGACTCTAATACAGAGTCCAATTCTTGTTTTGCTGGGTCTTATGGTTACATAGCCCCAGAGTATGCATACTCAATGAAGGCAACAGAGAAAAGTGATGTTTACAGCATGGGAATTGTGCTTATAGAACTTGCTAGTGGTAAGATGCCAACAGATGCAGCTTTTAGAGCAGAAATGGACATGGTGAGGTGGGTGGAGATGCTCATTGATATGCCAGACACTGCATGTGAGGAGTTGATAGATCCTGAGCTGAAACCCCTTTTGCCTGGTGAAGAGTTTGCTGCTTTCCAAGTGCTTGAGATAGCCATACAGTGCACAAAAACTGCACCACAGGAGAGGCCATCATCACGCCAAGTATGTGATCTTCTACTGCATGTAGCCAACAAGAAGAAGCTGGACTTTGAGAAGCTGAATTTGGATCATTACTAG 3681 0.43 MRVLLEVKSSFSEDPENVLSDWSENNTDYCSWRGVSCDDDSEQVVGLNLSESSLSGSISSSLGRLQNLLHLDLSSNRLKGPIPTTLSNLTSLESLILHSNQLTGHIPTELASLLSLRALRIGDNGLSGTIPASLGNLINLVYLGLASCRLTGPIPPQLGRLSELDNLILQKNELTGPIPPELGNCSSLTIFTAAENKLNDSIPSELGQLRKLRVLNLANNSLTGEIPSQLGQMSELKYLNFVENKLEGNIPMSLAQLGNLQTLDLSMNMLSGVIPEELGKLGQLQFMVLSGNKLSGTIPRTICSNATSLVFLSFSGNGLNGEIPAELGQCQSLKQLDLSNNFLNGSIPTEVYDLLGLSFLLLHNNSLLGSISPSIGNLTKLQTLALYHNKLIGALPREIGMLGKLEMMYLYDNELSGKIPLEIGNCSSLQKVDFFGNHFSGGIPSTIGRLKDLNFLHIRQNELGGEIPATLGNCHMLEVLDMADNNLSGGIPATFGFLRKLKQFMLYNNSLEGSIPHQMINVANLTRVNLSKNRLNGSLAALCSSWKFLSFDVTDNEFDSEIPFLLGNSPYLERLRLGNNKFSGEIPRTLGKITELSLLDLSGNSLTGPIPDELSLCHNLASIDLNNNFLSAHMPSWLGSLPQLGELKLSFNQFSGSIPLALFKLPRLLVLSLNNNYLNGSLPGDIGDLASLNVLSLHNNNFSGPIPHALGKLSNLYELQLSNNSFNGEIPTEIGNLQNLQSILDLSYNNLSGDIPPSLGMLSKLEALNISHNQLTGEVPLVVGEMMSLERLNISYNNLQGALDKKFSRWPQEAFEGNIHLCGASLGSCKHRGTSHKKLSGLSDTAVVIVSAISTLAAIALLVLAVSIFLKNKLELSRKGNEVNCVLSSSSTQARRSLFPLTSPGKRDFRWEDIMDATNNLSDEFIIGCGGSGTVYRVEFPTGEIVAVKRISWKDDYLLNKSFIREVKTLGRIKHRHLVKLIGCFSNRNKGTGWNLLVYEYMENGSVWDWLHGKPLKPGKANGCLDWDTRFKIAVGLAHGVAYLHHDCVPKIIHRDIKSSNILLDSKMEAHLGDFGLAKPLIENQDSNTESNSCFAGSYGYIAPEYAYSMKATEKSDVYSMGIVLIELASGKMPTDAAFRAEMDMVRWVEMLIDMPDTACEELIDPELKPLLPGEEFAAFQVLEIAIQCTKTAPQERPSSRQVCDLLLHVANKKKLDFEKLNLDHY* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2186 1226 Pfam Leucine rich repeat 210 270 IPR001611 GO:0005515
Apr1g2186 1226 Pfam Leucine rich repeat 47 102 IPR001611 GO:0005515
Apr1g2186 1226 SUPERFAMILY L domain-like 298 563 - -
Apr1g2186 1226 Pfam Protein kinase domain 926 1204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2186 1226 SUPERFAMILY Protein kinase-like (PK-like) 898 1207 IPR011009 -
Apr1g2186 1226 SMART serkin_6 921 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2186 1226 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 1 1222 - -
Apr1g2186 1226 ProSitePatterns Protein kinases ATP-binding region signature. 927 949 IPR017441 GO:0005524
Apr1g2186 1226 ProSiteProfiles Protein kinase domain profile. 921 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2186 1226 Gene3D Ribonuclease Inhibitor 542 838 IPR032675 -
Apr1g2186 1226 Gene3D Ribonuclease Inhibitor 352 441 IPR032675 -
Apr1g2186 1226 SUPERFAMILY L domain-like 10 347 - -
Apr1g2186 1226 Gene3D Transferase(Phosphotransferase) domain 1 1002 1224 - -
Apr1g2186 1226 PRINTS Leucine-rich repeat signature 260 273 - -
Apr1g2186 1226 PRINTS Leucine-rich repeat signature 762 775 - -
Apr1g2186 1226 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1052 1064 IPR008271 GO:0004672|GO:0006468
Apr1g2186 1226 Gene3D Ribonuclease Inhibitor 442 541 IPR032675 -
Apr1g2186 1226 SUPERFAMILY L domain-like 546 819 - -
Apr1g2186 1226 Gene3D Ribonuclease Inhibitor 150 248 IPR032675 -
Apr1g2186 1226 Pfam Leucine rich repeat N-terminal domain 3 38 IPR013210 -
Apr1g2186 1226 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 1222 - -
Apr1g2186 1226 Gene3D Ribonuclease Inhibitor 249 351 IPR032675 -
Apr1g2186 1226 SMART LRR_typ_2 209 233 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 65 88 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 161 185 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 737 762 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 641 665 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 522 545 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 593 617 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 786 817 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 257 280 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 281 305 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 689 713 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 378 402 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 330 354 IPR003591 -
Apr1g2186 1226 SMART LRR_typ_2 89 113 IPR003591 -
Apr1g2186 1226 Gene3D Ribonuclease Inhibitor 1 149 IPR032675 -
Apr1g2186 1226 Gene3D Phosphorylase Kinase; domain 1 882 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2186 Apr-Chr1 31311839 31315619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2186 123 759 Receptor kinase-like Gene Family AT1G17750 36.094 1.97e-92 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr1g2186 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2186 - - gmx:100819046 1852.8