Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2185 ATGGCATCTTCCCAAGTTGTTGAAATGGCTTCTTCTTCGCCCTTTGGTTGCGTTCTGAGGGACCGTAATCACCGCGATGGATGCAGGGAAAGCAACGTGAAGGCCACGCATGCCGCATTCCAAAGGAACATCAAGAACTTTGTGATGGACCACATTAACACGTGCATGTCCATGTCTTCTGACTCAACAAACGAGAACACCAACAATACTCACATGAACAACAATGGTTCATGGGTTTCAAAGGCTCGTAAAAACCGCAATCTCCATAGGCTTCATTTCAATAGAACCAACCATGACATCAACAATGACAAGGATGAAACCTCGTTGGCTTCATTGATTAGCCCCAGACACTCGCGCCTTCTTGATCGATGGGCTGCAAGACAAGCTCGTGAAATGGTGTCAACATTGGAGAATGAGGCTGAGTTATTGTCCATGAACAATAATAACAATCACAACAACAATAACGGTGACATGTTCACAAGGACTTGCAATAGTTCTAGCTCTGATGAGCCCTCCTCAGAAATCTCAAACCTTGGTGCATCTTCCCTTGTTCAGATATGGGAGAAGAGGCTTAACCAATGCAATGGCTCTAAACCAATAGAGAGGATTAGTCCCAATGCTGCAAGTGCTTCTAGCAACAATGAGAATGCGTCCTCTGTGGAGGAACAATGCATTGATGGGCCACCGGTGAATGAAGAATCTTTCCCTGATTGGGAATCTGATAAGACTGGACACAGTGATCAATCTGTTTCGCCACGTGGCAGGTCATGCTCTCCGGAGAGTGACAGGGTCAGTGTTGCTGACATAATCAAAAAGCTCACTGCTACAAACCATAATCAGAGTCCAACACCTTCTTTTGGTGATGACAATGAGAATGAAGTGTGTGGTGGTAGCAGCAGTGTCACAGGTTCTCCTTGTAGAGAGCGAGAATTTGGTGGCTTCACACAAGAGCAGTTAGAACATAAAGCTTTTCCTCAGATGGTTACTTCTTCTCTTCGAATTCGAGGTCGCCGGGCGTATAATGATTTGCTTATGCAGTTGGAGCATGACCGTTATGGGGAGCTCAAGAACCTGGCAGAACGTGGATCAGTCTCCAAGTTCACACACAGAGGTCGCATTCAGTCAGTGCTTCGACTTAGATTGTTACAGCGTGGTGCGGCAGCTAATGATCCACCCAGCCAGAAATCAACAGCATCTGAAGTCAACAGACAACAACAGGGATCAGCAATTATGCAATTAAGGGAAAGGTTTAATATTGGGGTTGAACTTAGAACTACAGTCCAGGGAGAAGTGGCTAGCCCAAGAAATCCTCATAGGGAGATAGTGAACAACAACACACAATTGGCTAACTTTCCCTCCACTGATCAACTCAGCAAAGACACAAGCAGCCAGACTCCTCATGGAATTGCTAATCACTCTACAGAATCCACACAAAAGTCAGTGTCACACACTGCAGCATATCATAATAGAGAAAAAGCTCATCCAAGTTCAGATGTCATGTTCCAAGAAACAAGTTTTCAGGCTCAACATCATGAGCCCCAAGAAACCGCTGAGGCAACTACTCCCATGACTGATTCAAATCTAAATGAGACAGATGATAGGGTAGAGACAAGCAACAAACAGAATGATATGGCTAAAAGCAGTAATGAAGAGACAGTAAATGAGGAAGAGGCAAGTAACCGCCGGTATGCTGAAATAAGTTATGAGGAGACAGTAGAAGAAGAGGATGTAAGCAATCAGAACTATGCTGAAAGCAGTTATGATGAGATGGTTGAAGAGGTAGAGACCATTGACCAGAATTATGATGAAATCAATTATGACTGGATCAGTGAAATTTCTAGGCCTAGGAGCTATTGGGAAGAGCGCAGGCAAGCATGGTATAGAGAGATGCTTGACAATGATTCTCATAATGAGGATATACGGAAGCTTCTTGAAAGACAAACGGTGTCAAATTTCCTTTCTAGTGACTTCCGAGAAAGAATGGATAGATTGATGGAATCTCATAGGGGAACACAAACACATGTAGTCAATAGTTATGATAATCATGAGGAAGACAACCAAGGGTTGATAGTATTTTTACAAGAGCATTTGCATAATGCGAGAGCTCCTCAAGAAGATGGAAGAGAGAGCGGGGAGGAAGAAGAGGAGGTGAGGATAAATCAGGATGGGGAAGAGGAAGAAGATGAGGAGGCAGATGAGCAGGAGCATGAACATGAAGAGGAGCATGAGGGGGAGAGTTTGATAAGTGGTTCATATCATGAAGTTGGCAAATATTCTAATCAATCCTCATCGTGGAGTTTCGGGGACAATGAAGCCGGTGATGAAGATCTTGATAGAGATGCTTCTACATCCTCTCCTCAACCTTATCAATCTCAGCCATTCTATCAGGATAGTCGGCGATGCTCTTCGTCCACCAATCATCATTCTATTGAAATGGAACTCATTTATGATTTGAGAGGGCACATGGATCAACTTTATCATGAGATATCTGAGCTCAGGAAATCAATAAAGGGCTGCATGGATATGCAGATGCAATTACAAAAATCCATGAACCGGGAGGTTCACACAGTTAAAAATGAAGAAAAGAAGCCCCATAACAAGGCTCCAAAGAAAGGCAACTGCTGTATTTGCTATGAGATGAAAGTTGACTCGCTTTTATACAGGTGTGGACACATGTGTACGTGTCTGAAGTGTGCCAATGAGTTGCAATGGAACAGTGGAAAATGTCCTATTTGTCGAGCTAAAATAGTCGATGTTGTTCGAGTATATGTTGACGATTAG 2781 0.4358 MASSQVVEMASSSPFGCVLRDRNHRDGCRESNVKATHAAFQRNIKNFVMDHINTCMSMSSDSTNENTNNTHMNNNGSWVSKARKNRNLHRLHFNRTNHDINNDKDETSLASLISPRHSRLLDRWAARQAREMVSTLENEAELLSMNNNNNHNNNNGDMFTRTCNSSSSDEPSSEISNLGASSLVQIWEKRLNQCNGSKPIERISPNAASASSNNENASSVEEQCIDGPPVNEESFPDWESDKTGHSDQSVSPRGRSCSPESDRVSVADIIKKLTATNHNQSPTPSFGDDNENEVCGGSSSVTGSPCREREFGGFTQEQLEHKAFPQMVTSSLRIRGRRAYNDLLMQLEHDRYGELKNLAERGSVSKFTHRGRIQSVLRLRLLQRGAAANDPPSQKSTASEVNRQQQGSAIMQLRERFNIGVELRTTVQGEVASPRNPHREIVNNNTQLANFPSTDQLSKDTSSQTPHGIANHSTESTQKSVSHTAAYHNREKAHPSSDVMFQETSFQAQHHEPQETAEATTPMTDSNLNETDDRVETSNKQNDMAKSSNEETVNEEEASNRRYAEISYEETVEEEDVSNQNYAESSYDEMVEEVETIDQNYDEINYDWISEISRPRSYWEERRQAWYREMLDNDSHNEDIRKLLERQTVSNFLSSDFRERMDRLMESHRGTQTHVVNSYDNHEEDNQGLIVFLQEHLHNARAPQEDGRESGEEEEEVRINQDGEEEEDEEADEQEHEHEEEHEGESLISGSYHEVGKYSNQSSSWSFGDNEAGDEDLDRDASTSSPQPYQSQPFYQDSRRCSSSTNHHSIEMELIYDLRGHMDQLYHEISELRKSIKGCMDMQMQLQKSMNREVHTVKNEEKKPHNKAPKKGNCCICYEMKVDSLLYRCGHMCTCLKCANELQWNSGKCPICRAKIVDVVRVYVDD* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2185 926 MobiDBLite consensus disorder prediction 389 407 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 386 407 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 197 262 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 505 528 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 700 803 - -
Apr1g2185 926 Coils Coil 126 146 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 275 307 - -
Apr1g2185 926 CDD mRING-HC-C3HC5_NEU1 873 913 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 450 484 - -
Apr1g2185 926 Pfam Zinc finger, C3HC4 type (RING finger) 871 918 - -
Apr1g2185 926 PANTHER BNAC05G24000D PROTEIN 1 925 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 549 563 - -
Apr1g2185 926 ProSiteProfiles Zinc finger RING-type profile. 874 913 IPR001841 -
Apr1g2185 926 MobiDBLite consensus disorder prediction 505 563 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 782 803 - -
Apr1g2185 926 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 856 925 IPR013083 -
Apr1g2185 926 PANTHER BNAC05G24000D PROTEIN 1 925 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 275 305 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 709 739 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 197 221 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 753 769 - -
Apr1g2185 926 SUPERFAMILY RING/U-box 873 918 - -
Apr1g2185 926 MobiDBLite consensus disorder prediction 145 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2185 Apr-Chr1 31300259 31304913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2185 874 922 C3H Transcription Factor Family AT3G06140 40.816 1.35e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2185 - - ccaj:109812885 1080.86