Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr1g2178 | ATGGAAGCATTCGGCGGTTACTTGGTGGACGAGAAAGCCGTTAGGGTTGAAAACGCCTTCTTAGAATTTCTCAAAAGCTTCAGATCCGGGCATCGTAGCGAGCTTCATTACGAAGCGGAGATCGAAGTAATGGGAGCCAACGAATCCAACACCATGTTCATCGATTTCGACCACGTCATCAGATTCAGCGATCTCCTCCAGCAAGCTATTTCCGATGAATATTTGAGATTCGAACCTTATTTGAAGAATGCTTGCAAGAGGTTCGTCATGGAGCTCAAGCCAACCTTCATATCTGATGATAACCCTAACAAGGACATTAACGTTGCCTTCTACAACATTCCAATCATTAAGAGGTTAAGGGAATTGGCTACATCAGAAATTGGAAGGCTTGTATCTGTGACAGGAGTGGTGACCAGGACAAGTGAGGTTCGGCCTGAGCTCCTCCAAGGAACTTTCAAGTGCCTGGAGTGTGGTGGGGTTATAAAGAATGTTGAGCAGCAATTCAAGTATACTGAGCCATCAATCTGTGTAAATGCCACCTGTAACAATCGAACAAAGTGGGCACTGTTGCGCCAAGAGAGCAAATTTGCTGACTGGCAAAGGGTAAGAATGCAGGAGACATCCAAAGAGATACCTGCAGGTTCTCTGCCTAGGTCATTGGATGTTATTCTTCGTCATGAGGTTGTGGAACAGGCCAGGGCTGGTGACACGGTGATTTTCACAGGCACTGTAGTTGTTATACCTGACTTATTGGCATTAGCTTCTCCTGGAGAAAGATCAGAGTGTCGTCGGGAAGCTTCTCAGCGCAAGGGTGCTACAGCTGGGAATGAAGGTGTGAGGGGCCTTAGGGCTTTGGGAGTCAGAGACCTCTCCTATCGTCTAGCTTTTATTGCCAATTCTGTTCAGATTTGTGATGGTAGAAGAGAAACAGACATCCGGAATAGAAAGAAGGATGCTGATGAAGACGATCAGCAGTTTACTGCACAGGAACTGGACGAAATTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAACTTGTTGAAAGCATTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGCGAGCAATTCTTCTTATGCTTATGGGTGGTGTTCACAAATTTACTCATGAAGGCATCAACCTAAGAGGAGACATAAACGTTTGTATTGTTGGAGATCCCAGCTGTGCAAAGTCTCAATTCCTTAAGTATACTTCAGGCATAGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCAGCTGCTGGCTTGACCGCAACTGTTGCCAAGGAACCAGAAACAGGGGAATTTTGTATTGAGGCTGGGGCATTGATGCTTGCAGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGACATTAGAGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAGACTATAAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGCTCGTACTTCCATTCTTGCTGCTGCCAATCCTGCTGGGGGACGATATGATAAATCTAAACCACTTAAGTATAATGTGGCTCTTCCACCAGCTATTCTTTCAAGGTTTGATCTTGTATATGTTATGATTGATGACCCAGACGAACAGACAGATTACCACATAGCTCATCATATTGTCAGAGTCCATCAAAAGCGTGAAGGTGCTCTTACACCAGCATTCACTACAGCGGAGCTGAAGCGTTATATAGCTTATGCAAAAACTATTAAACCAAAGCTCACGTCAGATGCCAGGAAACTACTCGTGGACTCTTATGTTGCTCTCCGTAGAGGTGATACAAATCCTGGGACTAGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAGGCATTGATCAGGCTGTCGGAGGCCATTGCTCGGTGTCATTTGGAAAATCAGGTACAACCTCGTCACGTTCGTCTAGCTGTGAAACTGCTGAAAACTTCCATAATAAGTGTGGAGTCCAGTGAGATTGACCTATCTGAGTTTCAAGAAGAAAACCGGGATGATGGAACCGGTAATGGTGATGAAAATGACAATAATAGAGATGCTAATGGTCATGTGGGAAACTCTACAGCTCAGCAAGCTGCTGGAACTGATGATGGGTCTAAACCCCAAGGGAAGAAACTTATTATAAGCGATGAATATTTTCAGAGAGTTACCAGGGCCCTTATCATGCGGCTTAGACAGCACGAAGAGACTGCTATGCAAGAAGGAACTGGTTTGGCTGGGATGAGGCAACGAGACTTGATTCAATGGTATGTAAACCAGCAAAATGAGAAAAACAATTACAGTTCCATGGAAGAGGCAGCAGCCGAAGTTTCCAAAGTTAAAGCTATTATAGAGAGTTTAATTCGAAGAGAGGGCCATCTGATAGTGGTAGACGACGGTAGGCAAGCAGCAGCAGAAGCTGGAGGTGCAGAGCAGTCAACATCGGTATCTAGAAATGACCGAATTTTAGCTGTGGCTCCTAATTATGTCATTGATTGA | 2499 | 0.4442 | MEAFGGYLVDEKAVRVENAFLEFLKSFRSGHRSELHYEAEIEVMGANESNTMFIDFDHVIRFSDLLQQAISDEYLRFEPYLKNACKRFVMELKPTFISDDNPNKDINVAFYNIPIIKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPSICVNATCNNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEVVEQARAGDTVIFTGTVVVIPDLLALASPGERSECRREASQRKGATAGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRRETDIRNRKKDADEDDQQFTAQELDEIQRMRNTPDFFTKLVESIAPTVFGHPDIKRAILLMLMGGVHKFTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDEQTDYHIAHHIVRVHQKREGALTPAFTTAELKRYIAYAKTIKPKLTSDARKLLVDSYVALRRGDTNPGTRVAYRMTVRQLEALIRLSEAIARCHLENQVQPRHVRLAVKLLKTSIISVESSEIDLSEFQEENRDDGTGNGDENDNNRDANGHVGNSTAQQAAGTDDGSKPQGKKLIISDEYFQRVTRALIMRLRQHEETAMQEGTGLAGMRQRDLIQWYVNQQNEKNNYSSMEEAAAEVSKVKAIIESLIRREGHLIVVDDGRQAAAEAGGAEQSTSVSRNDRILAVAPNYVID* | 833 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr1g2178 | 832 | SMART | mcm | 115 | 654 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Apr1g2178 | 832 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 10 | 781 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Apr1g2178 | 832 | Pfam | MCM6 C-terminal winged-helix domain | 711 | 831 | IPR041024 | - | |
| Apr1g2178 | 832 | Gene3D | - | 8 | 115 | - | - | |
| Apr1g2178 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Apr1g2178 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Apr1g2178 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 166 | 183 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Apr1g2178 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 219 | 230 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Apr1g2178 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 278 | 299 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Apr1g2178 | 832 | ProSiteProfiles | MCM family domain profile. | 343 | 549 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Apr1g2178 | 832 | CDD | MCM6 | 346 | 652 | - | - | |
| Apr1g2178 | 832 | Pfam | MCM AAA-lid domain | 568 | 653 | IPR041562 | - | |
| Apr1g2178 | 832 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 10 | 781 | - | - | |
| Apr1g2178 | 832 | MobiDBLite | consensus disorder prediction | 687 | 704 | - | - | |
| Apr1g2178 | 832 | Pfam | MCM N-terminal domain | 18 | 112 | IPR027925 | - | |
| Apr1g2178 | 832 | Pfam | MCM OB domain | 119 | 247 | IPR033762 | - | |
| Apr1g2178 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 384 | 399 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Apr1g2178 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 444 | 458 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Apr1g2178 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 472 | 485 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Apr1g2178 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 496 | 508 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Apr1g2178 | 832 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 523 | 531 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Apr1g2178 | 832 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 249 | IPR012340 | - | |
| Apr1g2178 | 832 | ProSitePatterns | MCM family signature. | 452 | 460 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Apr1g2178 | 832 | Pfam | MCM P-loop domain | 331 | 553 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Apr1g2178 | 832 | MobiDBLite | consensus disorder prediction | 664 | 686 | - | - | |
| Apr1g2178 | 832 | Gene3D | - | 119 | 247 | IPR012340 | - | |
| Apr1g2178 | 832 | Gene3D | - | 709 | 832 | - | - | |
| Apr1g2178 | 832 | Gene3D | - | 324 | 671 | IPR027417 | - | |
| Apr1g2178 | 832 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 353 | 654 | IPR027417 | - | |
| Apr1g2178 | 832 | Coils | Coil | 770 | 790 | - | - | |
| Apr1g2178 | 832 | MobiDBLite | consensus disorder prediction | 664 | 711 | - | - | |
| Apr1g2178 | 832 | Gene3D | - | 146 | 197 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr1g2178 | Apr-Chr1 | 31239419 | 31244836 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr1g2178 | 1 | 832 | Core DNA Replication Machinery Family | AT5G44635 | 73.519 | 0.0 | 1296 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr1g2178 | K02542 | - | gmx:100787290 | 1408.28 |