Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2175 ATGTTAAAATTTCTAAGCAGGAGCGTTTCTCCAAAACTGGTTTACCACCCATGGCCATGGCTTTCTCCGAAATTCCTCTGCACCCATTCAAAACAAAACTCTTTTACAGCCTCATACCTCATCGAGACTTGTGGATTTTCCCCGCACCGCGCCGAATCGCTTTCCAAACACATGAATTTCGAAACGCACGAAAAACCTGACACCGTGATCGAGTTCTTCAAAACCCTAGGTTTCTCGCAAACCAAGGCCCTAAGAATCGTTCGAAGCGTCCCAGATATCCTTCGAACCAATCCCAACAAACATTTGTATCAAAGGATCGAATTTTTGAAGTCCAAAGGGTTTTCTGACTCCGACATACGCAACATCATAAGTAACTTCCCTATTATCCTCTGCAGAAGCTTGAAGAGAGAGATAATTCCCTGTTTTGGTTACTTCAGCAACATGTTTCAGTCTCAGCACAAGTTCATGAAAACCGTTGTTCGCTATTCGGGTATTCTTTGTGACTTTGCAAAGGTTTCAGGGTTAAATCTCCAAACTTTGAGGGAAGAAGGGGTTCCTGAATCACTTGTTATAAGATTTGTGGAGTACTATCCACGCACATTGAAATCATCCCCTAAGAAGTTTAAGGAGTCAGTTTTAGAAGTTAAGGAATTGGGGTTTAACCCTTTGAGGATGCAATTTATTGTTGCTGCTCATTTGAAGGTGGGTCTGAGTAGGTCCACATGGGCAAGGAAGGAATGTGTTTATAGAAAATGGGGTTGGAGTAATGATGATATTTTAGCTGCTTTCAGAGTGCATCCTTTCTGTATGGCCACTTCAGAAAGTAAGATTGAGGATATTATGGATTTTCTGGTGAACAAGTTGGGTTTTAAGGCTTCTGATGCTGCAAGGTATCCCGTGGTGTTGTCTATGAGCTTGGGAAAAAGGATCACTCCAAGGGGTTCTGTTTTTCTGTTTTTGAAGTCAAAGGGTCTGATGAAGATGAAGGAGATGAGCCTGCGTGCAATTTTTCAGTTTAATGAAAAGCTGTTCTTGGATAAGTTTATCTATTGTCATGACAAGGAAGCTGATGAACTATTGAAGTTGTATAAGGCTAAATTGACTCTTGCAAGGTAA 1116 0.4131 MLKFLSRSVSPKLVYHPWPWLSPKFLCTHSKQNSFTASYLIETCGFSPHRAESLSKHMNFETHEKPDTVIEFFKTLGFSQTKALRIVRSVPDILRTNPNKHLYQRIEFLKSKGFSDSDIRNIISNFPIILCRSLKREIIPCFGYFSNMFQSQHKFMKTVVRYSGILCDFAKVSGLNLQTLREEGVPESLVIRFVEYYPRTLKSSPKKFKESVLEVKELGFNPLRMQFIVAAHLKVGLSRSTWARKECVYRKWGWSNDDILAAFRVHPFCMATSESKIEDIMDFLVNKLGFKASDAARYPVVLSMSLGKRITPRGSVFLFLKSKGLMKMKEMSLRAIFQFNEKLFLDKFIYCHDKEADELLKLYKAKLTLAR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2175 371 PANTHER CGI-12 PROTEIN-RELATED 28 368 IPR003690 GO:0003690|GO:0006355
Apr1g2175 371 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 28 368 - -
Apr1g2175 371 Pfam mTERF 178 344 IPR003690 GO:0003690|GO:0006355
Apr1g2175 371 Pfam mTERF 63 167 IPR003690 GO:0003690|GO:0006355
Apr1g2175 371 SMART mt_12 120 151 IPR003690 GO:0003690|GO:0006355
Apr1g2175 371 SMART mt_12 84 115 IPR003690 GO:0003690|GO:0006355
Apr1g2175 371 SMART mt_12 292 326 IPR003690 GO:0003690|GO:0006355
Apr1g2175 371 SMART mt_12 191 221 IPR003690 GO:0003690|GO:0006355
Apr1g2175 371 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Apr1g2175 371 Gene3D Transcription termination factor 3, mitochondrial 174 362 IPR038538 -
Apr1g2175 371 Gene3D Transcription termination factor 3, mitochondrial 34 173 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2175 Apr-Chr1 31222190 31223713 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Apr1g2175 mTERF 3.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2175 K15032 - rcu:107260742 297.745