Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2174 ATGTTCAAATTTCTCAGCAGGAACACTTATCCAAAACCGGTTTTCTCCCAAAACCACCCATGGCTATGGTTTTCTCTGAAATTCATCGGCACCCATTCGAAAGAAAAGTCTTTTACAATCTCATACCTCATCGACATTTGTGGGTTTCCCCCACACCGTGCTGAATCGCTTTCCAAACGCATGAATTTCAAAACGCGGGAAAAACCAGACACCGTGATCCAGTTCTTGAACAACCTCGGTTTCTCGCAAACCAATACCTTAAAAATCATTCGATCCGTCCCAGAAATGCTTCGAACCGATCCCAACAAAATTTTGCAGCAAAAAATCGATTTTTTGAAGTCCAAAGGGTTTTCTGACTCTGACATACGCTGCATCATAACCGGGTACCCTTCAATCCTCCGTGCAGGCTTGAAGGGAGAGATAATTCCCTGTTTTGATTTCTTCAACAACATGTTTGAATCTCAGCACAAGTTCATGAAAACCGTTGTTCGCTATTCCGGTATTCTCTGTAACCTTGCTAAGTGTTCTGCTTTAAATATCCAATATCTGAAGGATGAAGGAGTTCCTGAATCAATTATTATTAGATTCGTAGAGTACTTTCCACGCACATTGAAAGTACCCTCTAATAGGTTTAAGGGGTTACTGCAAGAAGTTCAGGATTTGGGGTTTAACCCTTTGAGGTTGCAATTTGTTATAGCTGTTCATATAAAGGTGTGTTTGAGCAGATCCACGTGGGCAAGGAAAGAGGGTGTTTATAGAAAGTGGGGTTGGAGTGACGATGATATTGCAGTGGCATTTAGAGGTCACCCTTTCTGTATGTCCATTTCTGAAAGTAAGATTGAGGATGCCATGGATTTTCTGGTGAACAAGTTGGGTTTTCAGGTTTCCGATATTGCAAAGTATCCGGTCGTGTTGTCTATGAGTTTGGTGAAACGGATCATTCCAAGGGGTTCTGTTGTTCTTGTTTTGAAGTCAAAGGGTCTGGTGACAAAGTTGAACCTGGGTAGAATTTTTAGGTATGATGAAAAGTACTTCTTGGATAGGTTTATCTATCGTCATGAGAAGGAAGCTGATAAGTTATTGAAGTTGTACAAGGCTAAATTGAGTCTTGCAGGGTGA 1119 0.412 MFKFLSRNTYPKPVFSQNHPWLWFSLKFIGTHSKEKSFTISYLIDICGFPPHRAESLSKRMNFKTREKPDTVIQFLNNLGFSQTNTLKIIRSVPEMLRTDPNKILQQKIDFLKSKGFSDSDIRCIITGYPSILRAGLKGEIIPCFDFFNNMFESQHKFMKTVVRYSGILCNLAKCSALNIQYLKDEGVPESIIIRFVEYFPRTLKVPSNRFKGLLQEVQDLGFNPLRLQFVIAVHIKVCLSRSTWARKEGVYRKWGWSDDDIAVAFRGHPFCMSISESKIEDAMDFLVNKLGFQVSDIAKYPVVLSMSLVKRIIPRGSVVLVLKSKGLVTKLNLGRIFRYDEKYFLDRFIYRHEKEADKLLKLYKAKLSLAG* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2174 372 Pfam mTERF 73 223 IPR003690 GO:0003690|GO:0006355
Apr1g2174 372 Pfam mTERF 179 345 IPR003690 GO:0003690|GO:0006355
Apr1g2174 372 SMART mt_12 194 224 IPR003690 GO:0003690|GO:0006355
Apr1g2174 372 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Apr1g2174 372 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Apr1g2174 372 SMART mt_12 295 329 IPR003690 GO:0003690|GO:0006355
Apr1g2174 372 SMART mt_12 123 155 IPR003690 GO:0003690|GO:0006355
Apr1g2174 372 Gene3D Transcription termination factor 3, mitochondrial 154 363 IPR038538 -
Apr1g2174 372 PANTHER CGI-12 PROTEIN-RELATED 28 369 IPR003690 GO:0003690|GO:0006355
Apr1g2174 372 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 28 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2174 Apr-Chr1 31215414 31218398 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Apr1g2174 mTERF 7.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2174 K15032 - twl:120012851 288.5