Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2172 ATGTTCAGTCACAGCATGGATTCTGCAAGGGATGCGGGTGGTGTTGCAGGGACAGTGTTAATTCCCATGCGTTTTGTGTGGCCATATGGAGGAAGGAGTGTATTTCTCTGTGGTTCTTTCACACGGTGGACTGAGCTTCTACCAATGTCGCCAGTGGAAGGTTGCCCAACTGTGTTTCAAGTTATTTATAATTTGCCCCCTGGTTACCATCAGTTCAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAACATCAACCTCATGTACCTGGAGAGTACGGGATAGTCAACACTGTCTTCTTGGCTACTGATCCTAACTACATGCCTGTTTTAACCCCAGACATCGCTTCTGCAAATAACATGGATGTGGATAATGAGGCTTTTCGCCGTATGCAGGTTCGATTGACTGATGGTACATTGGGTGAGGTGCTGCCCAGTATATCAGGTGCTGATCTACAGATCTCCTGTCAGCGTATTTCTGCGTTTCTGTCTACGCACACAGCTTACGAATTGCTTCCTGAGTCAGGCAAGGTTGTTGCTTTGGATGTTGATCTGCCAGTGAAACAGGCATTTCATATACTGCATGAGCAGGGAATTTACATGGCTCCACTTTGGGACTTCTGCAAGGGGCAATTTGTTGGTGTTCTTAGCGCTTTGGATTTTATTTTAATTTTAAGAGAGCTGGGGAATCGTGGGTCCAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCAGCTTGGAAAGAAGGAAAGTCATATCTAAATAGACAAAACAATGGTCATGGAAGTGCCTTTTCAAGACGATTCATCTATGCAGGGCCATATGATAATCTGAAAGACATTGCCATGAAGATCTTGCAAAAGGAGGTTTCAACTGTTCCTGTTATCCATTCATCTTCTGAAGATGGTTCATTTCCACAGTTACTACACCTTGCTTCACTTTCAGGAATACTAAAATGCATTTGTAGGTATTTCAGGCATTGTTCTAATTCATTGCCTGTACTTCAACTTCCAATCAGTGCGATACCTGTGGGCACGTGGGTGCCCAGAATTGGGGAATCAAATCGGCAGCCTCTAGCAATGTTGAGACCATCTGCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGTTCAATACCAATAGTTGACGATAACGACTCATTATTGGATATATATTGTCGGAGTGATATAACGGCTTTGGCGAAGGACAGAGCATATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGATGCATATAGTCCCTATGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGGGTTCTGATCCTCTGCATAAAGTGATGGAACGTCTGGCAAATCCAGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGTGACATATTCAAGTTCTTCTTTGGCGGTTAG 1479 0.4361 MFSHSMDSARDAGGVAGTVLIPMRFVWPYGGRSVFLCGSFTRWTELLPMSPVEGCPTVFQVIYNLPPGYHQFKFFVDGEWRHDEHQPHVPGEYGIVNTVFLATDPNYMPVLTPDIASANNMDVDNEAFRRMQVRLTDGTLGEVLPSISGADLQISCQRISAFLSTHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYMAPLWDFCKGQFVGVLSALDFILILRELGNRGSNLTEEELETHTISAWKEGKSYLNRQNNGHGSAFSRRFIYAGPYDNLKDIAMKILQKEVSTVPVIHSSSEDGSFPQLLHLASLSGILKCICRYFRHCSNSLPVLQLPISAIPVGTWVPRIGESNRQPLAMLRPSASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLGSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFFGG* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2172 492 CDD E_set_AMPKbeta_like_N 22 100 - -
Apr1g2172 492 Gene3D Immunoglobulins 17 101 IPR013783 -
Apr1g2172 492 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 490 - -
Apr1g2172 492 SMART cbs_1 177 226 IPR000644 -
Apr1g2172 492 SMART cbs_1 441 490 IPR000644 -
Apr1g2172 492 SMART cbs_1 359 407 IPR000644 -
Apr1g2172 492 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 490 - -
Apr1g2172 492 ProSiteProfiles CBS domain profile. 355 412 IPR000644 -
Apr1g2172 492 SUPERFAMILY CBS-domain pair 158 328 IPR046342 -
Apr1g2172 492 SUPERFAMILY E set domains 21 102 IPR014756 -
Apr1g2172 492 ProSiteProfiles CBS domain profile. 437 492 IPR000644 -
Apr1g2172 492 Pfam CBS domain 358 403 IPR000644 -
Apr1g2172 492 Pfam CBS domain 444 489 IPR000644 -
Apr1g2172 492 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
Apr1g2172 492 SUPERFAMILY CBS-domain pair 357 490 IPR046342 -
Apr1g2172 492 Gene3D - 338 492 IPR046342 -
Apr1g2172 492 Gene3D - 151 332 IPR046342 -
Apr1g2172 492 Pfam Glycogen recognition site of AMP-activated protein kinase 21 101 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2172 Apr-Chr1 31202876 31211903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2172 11 129 Protein tyrosine phosphatase (PTP) family AT3G01510 28.125 5.64e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2172 - - gmx:100785692 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2219 9 30101498 30111137 Apr1g2172 1 31202876 31211903 PCT