Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2168 ATGGATGACAACATTGGAGGAAGTTCCTCAAACGACAATGGTTATGATGGTATCAAAGAACAGGACCGGATGCTGCCAATAGCCAATGTTGGACGGCTCATGAAGCAGATTTTACCTCAGAATGCAAAAATCTCGAAGGAAGCGAAGGAAACAATGCAAGAATGTGTGTCGGAGTTCATAAGCTTTGTGACCAGTGAAGCTTCGGAGAAGTGTAGAAAGGAAAGGAGAAAGACTGTGAATGGTGATGACATTTGCTGGGCCTTGACTACACTTGGCTTTGATGACTATGCAGAACCCATGAGAAGGTACTTGCATAGATATAGAGAATTAGAGGTAGATCATCACAAGGTAAATCAAGAGAGAGGGAATAATAGCCCCCAAGAAAAGGATGAACTATATAAATTGCGCAATAGAGTGGGATTTGATTGA 429 0.4196 MDDNIGGSSSNDNGYDGIKEQDRMLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALTTLGFDDYAEPMRRYLHRYRELEVDHHKVNQERGNNSPQEKDELYKLRNRVGFD* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2168 142 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Apr1g2168 142 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Apr1g2168 142 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Apr1g2168 142 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Apr1g2168 142 SUPERFAMILY Histone-fold 21 133 IPR009072 GO:0046982
Apr1g2168 142 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 130 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr1g2168 142 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Apr1g2168 142 Gene3D Histone, subunit A 14 138 IPR009072 GO:0046982
Apr1g2168 142 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2168 Apr-Chr1 31152741 31153279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2168 4 115 CCAAT-HAP3 Transcription Factor Family AT2G47810 64.885 8.50e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr1g2168 CBFD_NFYB_HMF 3.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2168 K08065 - gmx:100794513 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2168 1 31152741 31153279 Apr1g2168 1 31152741 31153279 ECH
Apr9g2225 9 30155838 30156254 Apr1g2168 1 31152741 31153279 PCT